Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BSO20_RS00270 | Genome accession | NZ_CP018200 |
| Coordinates | 40663..40998 (-) | Length | 111 a.a. |
| NCBI ID | WP_003153104.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain WS-8 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 35663..45998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSO20_RS00220 (BSO20_00220) | comGC | 35895..36161 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BSO20_RS00225 (BSO20_00225) | comGD | 36151..36588 (+) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| BSO20_RS00230 (BSO20_00230) | comGE | 36572..36886 (+) | 315 | WP_032874016.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| BSO20_RS00235 (BSO20_00235) | comGF | 36795..37295 (+) | 501 | WP_223204419.1 | competence type IV pilus minor pilin ComGF | - |
| BSO20_RS00240 (BSO20_00240) | comGG | 37296..37673 (+) | 378 | WP_032874019.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| BSO20_RS00245 (BSO20_00245) | - | 37730..37909 (+) | 180 | WP_022552966.1 | YqzE family protein | - |
| BSO20_RS00250 (BSO20_00250) | - | 37950..38279 (-) | 330 | WP_032874021.1 | DUF3889 domain-containing protein | - |
| BSO20_RS00255 (BSO20_00255) | tapA | 38538..39209 (+) | 672 | WP_032874023.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BSO20_RS00260 (BSO20_00260) | sipW | 39181..39765 (+) | 585 | WP_032874025.1 | signal peptidase I SipW | - |
| BSO20_RS00265 (BSO20_00265) | tasA | 39830..40615 (+) | 786 | WP_032874027.1 | biofilm matrix protein TasA | - |
| BSO20_RS00270 (BSO20_00270) | sinR | 40663..40998 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| BSO20_RS00275 (BSO20_00275) | sinI | 41032..41205 (-) | 174 | WP_032874029.1 | anti-repressor SinI | Regulator |
| BSO20_RS00280 (BSO20_00280) | - | 41382..42176 (-) | 795 | WP_007612541.1 | YqhG family protein | - |
| BSO20_RS00285 (BSO20_00285) | - | 42198..43868 (-) | 1671 | WP_032874031.1 | DEAD/DEAH box helicase | - |
| BSO20_RS00290 (BSO20_00290) | gcvT | 44291..45391 (+) | 1101 | WP_032874033.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12972.64 Da Isoelectric Point: 7.2023
>NTDB_id=207100 BSO20_RS00270 WP_003153104.1 40663..40998(-) (sinR) [Bacillus amyloliquefaciens strain WS-8]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=207100 BSO20_RS00270 WP_003153104.1 40663..40998(-) (sinR) [Bacillus amyloliquefaciens strain WS-8]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |