Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BSO20_RS00210 | Genome accession | NZ_CP018200 |
| Coordinates | 33754..34824 (+) | Length | 356 a.a. |
| NCBI ID | WP_003153083.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain WS-8 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 28754..39824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSO20_RS00180 (BSO20_00180) | - | 29224..29469 (-) | 246 | WP_003153078.1 | DUF2626 domain-containing protein | - |
| BSO20_RS00185 (BSO20_00185) | - | 29706..30086 (+) | 381 | WP_032874006.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| BSO20_RS00195 (BSO20_00195) | - | 30292..31122 (+) | 831 | WP_032874008.1 | STAS domain-containing protein | - |
| BSO20_RS00200 (BSO20_00200) | - | 31160..32461 (-) | 1302 | WP_032874010.1 | hemolysin family protein | - |
| BSO20_RS00205 (BSO20_00205) | - | 32607..33557 (+) | 951 | WP_032874012.1 | magnesium transporter CorA family protein | - |
| BSO20_RS00210 (BSO20_00210) | comGA | 33754..34824 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BSO20_RS00215 (BSO20_00215) | comGB | 34811..35848 (+) | 1038 | WP_032874014.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| BSO20_RS00220 (BSO20_00220) | comGC | 35895..36161 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BSO20_RS00225 (BSO20_00225) | comGD | 36151..36588 (+) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| BSO20_RS00230 (BSO20_00230) | comGE | 36572..36886 (+) | 315 | WP_032874016.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| BSO20_RS00235 (BSO20_00235) | comGF | 36795..37295 (+) | 501 | WP_223204419.1 | competence type IV pilus minor pilin ComGF | - |
| BSO20_RS00240 (BSO20_00240) | comGG | 37296..37673 (+) | 378 | WP_032874019.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| BSO20_RS00245 (BSO20_00245) | - | 37730..37909 (+) | 180 | WP_022552966.1 | YqzE family protein | - |
| BSO20_RS00250 (BSO20_00250) | - | 37950..38279 (-) | 330 | WP_032874021.1 | DUF3889 domain-containing protein | - |
| BSO20_RS00255 (BSO20_00255) | tapA | 38538..39209 (+) | 672 | WP_032874023.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BSO20_RS00260 (BSO20_00260) | sipW | 39181..39765 (+) | 585 | WP_032874025.1 | signal peptidase I SipW | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40529.85 Da Isoelectric Point: 9.4729
>NTDB_id=207094 BSO20_RS00210 WP_003153083.1 33754..34824(+) (comGA) [Bacillus amyloliquefaciens strain WS-8]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
Nucleotide
Download Length: 1071 bp
>NTDB_id=207094 BSO20_RS00210 WP_003153083.1 33754..34824(+) (comGA) [Bacillus amyloliquefaciens strain WS-8]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCATATACGGCAAGGGCTTCAGATATACACATTGTACC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGGAAGCCGCAAAACGGGTCATTGTCT
TTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCATATACGGCAAGGGCTTCAGATATACACATTGTACC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGGAAGCCGCAAAACGGGTCATTGTCT
TTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
82.022 |
100 |
0.82 |
| pilB | Glaesserella parasuis strain SC1401 |
38.793 |
97.753 |
0.379 |
| pilF | Thermus thermophilus HB27 |
37.892 |
98.596 |
0.374 |