Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   BK815_RS09715 Genome accession   NZ_CP018199
Coordinates   2008399..2009748 (-) Length   449 a.a.
NCBI ID   WP_073505267.1    Uniprot ID   -
Organism   Staphylococcus succinus strain 14BME20     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003399..2014748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS09685 - 2003719..2004156 (+) 438 Protein_1887 type I restriction enzyme endonuclease domain-containing protein -
  BK815_RS09690 - 2004202..2004882 (-) 681 WP_073505262.1 replication initiation protein -
  BK815_RS09695 - 2005010..2005513 (-) 504 WP_073505263.1 DUF1643 domain-containing protein -
  BK815_RS09700 - 2005531..2005845 (-) 315 WP_073505264.1 DUF960 family protein -
  BK815_RS09705 - 2005939..2006280 (-) 342 WP_073505265.1 SAUGI family uracil-DNA glycosylase inhibitor -
  BK815_RS09710 ccrB 2006751..2008379 (-) 1629 WP_073505266.1 cassette chromosome recombinase CcrB Machinery gene
  BK815_RS09715 ccrA 2008399..2009748 (-) 1350 WP_073505267.1 cassette chromosome recombinase CcrA Machinery gene
  BK815_RS09720 - 2009919..2010182 (-) 264 WP_047505043.1 hypothetical protein -
  BK815_RS09725 cch1 2010248..2012038 (-) 1791 WP_073505268.1 cassette chromosome replicative helicase -
  BK815_RS09730 ssb 2012038..2012286 (-) 249 WP_073505269.1 cassette chromosome ssDNA-binding protein -
  BK815_RS09735 - 2012416..2013849 (-) 1434 WP_073505270.1 DUF6038 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52023.98 Da        Isoelectric Point: 10.1516

>NTDB_id=207092 BK815_RS09715 WP_073505267.1 2008399..2009748(-) (ccrA) [Staphylococcus succinus strain 14BME20]
MKQAIGYLRQSTLKQQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGKCDVLCCYRLNRLHRN
LKNALKLIKLCQKYNVDILSVNDGYFDLNKSFDRLKLNIFISLAELESDNIGEQVSNGIKEKARQGKLITTHAPFGYHYY
KGTFVINPGEAQTVTAVFKYYLQGYGYKKIAQYLEEDNRLINRKPYQVRNIIMNPNYCGRVNNKYGTFDNMFPSIISKAM
YKNAQAIRVNKQVQRTPSANLLKQKIKCPCCDSTLTNMTIRKKEHTLRYYVCPKNMNESRFVCSFKGINAQELEVQVLAT
CQNFFQNQQLYSKINNTIHQRLKKQRVIEAKSTLTQEQLIDKLAKGMIDAESFRKQTHSMNQKHKTISSISDNQLQTSLQ
KVIQHSFTLNMLYPYIDEIHITKNKALVGIYFKNEPLNIVNQTSQLSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=207092 BK815_RS09715 WP_073505267.1 2008399..2009748(-) (ccrA) [Staphylococcus succinus strain 14BME20]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAACAACAATCACTCTCAGCCCAGAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGAAAATGTGATGTATTATGCTGCTATCGTCTTAATCGACTACATCGTAAT
TTGAAAAATGCGCTAAAATTAATTAAATTATGCCAGAAGTACAATGTAGATATCTTAAGTGTTAATGATGGCTATTTTGA
TTTAAACAAATCATTTGATCGTCTAAAACTCAATATCTTCATTTCATTAGCTGAACTTGAGTCAGATAATATTGGTGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCACGTCAAGGTAAACTGATTACCACACATGCACCTTTTGGATATCATTATTAT
AAAGGCACATTTGTAATAAACCCAGGAGAAGCACAAACGGTGACTGCAGTATTCAAATACTATCTTCAAGGGTATGGTTA
CAAAAAGATTGCACAATATTTGGAAGAAGATAATAGGTTAATCAACCGAAAACCATATCAAGTACGTAACATTATTATGA
ACCCTAATTACTGTGGACGCGTGAATAACAAATACGGCACTTTTGATAATATGTTCCCATCTATTATCAGTAAAGCAATG
TATAAAAATGCTCAAGCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACGCTGACAAATATGACGATAAGAAAAAAAGAACATACATTGCGATATTATGTTTGTCCTA
AAAATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGGATAAATGCACAAGAATTAGAAGTTCAAGTCTTAGCTACA
TGTCAGAACTTCTTTCAAAACCAACAACTCTATTCAAAAATTAATAATACGATTCATCAACGCCTCAAAAAACAAAGAGT
GATAGAAGCTAAAAGTACGCTAACTCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAATCATTCA
GAAAACAGACTCATTCGATGAATCAAAAGCACAAAACCATATCCTCCATAAGTGATAATCAGTTACAAACATCACTACAA
AAGGTTATACAGCATAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAACAAAGCCCT
TGTTGGGATCTATTTCAAAAATGAACCACTGAACATTGTGAACCAAACCTCGCAATTATCGATTGCCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(170-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.951

100

0.78
  ccrA Staphylococcus aureus N315

71.492

100

0.715

Multiple sequence alignment