Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   BK815_RS09710 Genome accession   NZ_CP018199
Coordinates   2006751..2008379 (-) Length   542 a.a.
NCBI ID   WP_073505266.1    Uniprot ID   -
Organism   Staphylococcus succinus strain 14BME20     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2001751..2013379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS09680 - 2001961..2003598 (+) 1638 WP_073505261.1 class I SAM-dependent methyltransferase -
  BK815_RS09685 - 2003719..2004156 (+) 438 Protein_1887 type I restriction enzyme endonuclease domain-containing protein -
  BK815_RS09690 - 2004202..2004882 (-) 681 WP_073505262.1 replication initiation protein -
  BK815_RS09695 - 2005010..2005513 (-) 504 WP_073505263.1 DUF1643 domain-containing protein -
  BK815_RS09700 - 2005531..2005845 (-) 315 WP_073505264.1 DUF960 family protein -
  BK815_RS09705 - 2005939..2006280 (-) 342 WP_073505265.1 SAUGI family uracil-DNA glycosylase inhibitor -
  BK815_RS09710 ccrB 2006751..2008379 (-) 1629 WP_073505266.1 cassette chromosome recombinase CcrB Machinery gene
  BK815_RS09715 ccrA 2008399..2009748 (-) 1350 WP_073505267.1 cassette chromosome recombinase CcrA Machinery gene
  BK815_RS09720 - 2009919..2010182 (-) 264 WP_047505043.1 hypothetical protein -
  BK815_RS09725 cch1 2010248..2012038 (-) 1791 WP_073505268.1 cassette chromosome replicative helicase -
  BK815_RS09730 ssb 2012038..2012286 (-) 249 WP_073505269.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62324.31 Da        Isoelectric Point: 9.9884

>NTDB_id=207091 BK815_RS09710 WP_073505266.1 2006751..2008379(-) (ccrB) [Staphylococcus succinus strain 14BME20]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYGKIPDNKHELMINQYEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKNKPFSIGSVTYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVIANGKHSPIISQELWDKVQARKKQVSKKPQVHGKGTNILTGLISCPKCSASMSASTTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVVERVNKGKQVDIAALNHDIAYKQQQFD
KVHAKLDNLVKTVEDNPDLTSALKETIHQYEKQMTDISKQINLLKQKQNEDKSSYDTKQLSVLLRRIFQNIESMDKTQIK
ALFLTIIDHIDIRKDSNHKKQFYVTLKLNNDIIKQLFNNSPLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=207091 BK815_RS09710 WP_073505266.1 2006751..2008379(-) (ccrB) [Staphylococcus succinus strain 14BME20]
ATGCAACAACTTAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGCTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGTTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAGAATGTATTCATGGGACAAACTCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCATTAGGCTATGGTAAGATACCAGATAATAAACATGAACTCATGATTAATCAATATGAAGCCAATATCGTTAAATA
CATCTTTGAATCATATGCGAAAGGACATGGATATCGTAAAATTGCTAATGCTCTCAATCATAAAGGTTATGTCACTAAAA
AAAATAAACCATTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATATTGGTAAAATTCAATTTGCCAAA
TACAAAGATTGGAATGAAAAACGTCGTAAGGGATTAAATGATAATCCAGTAATTGCTAATGGAAAGCACTCCCCTATCAT
TAGTCAAGAGCTGTGGGATAAAGTACAAGCTCGTAAGAAGCAAGTCAGCAAAAAACCACAAGTTCATGGTAAAGGGACAA
ATATTTTAACTGGGTTAATTTCGTGTCCAAAATGTTCTGCTTCTATGTCTGCGAGCACGACAACCAATACACTTAAAGAT
GGTACAAAAAAGCGAATACGCTATTATTCCTGTAGTAATTTTCGCAACAAAGGATCGAAAGTGTGTTCTGCAAATAGTGT
AAGGGCAGATGTCATAGAAAAATATGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAGGTCATCAACCAAGTCG
TAGAACGTGTCAATAAAGGGAAGCAAGTCGATATAGCTGCACTTAACCATGATATCGCTTATAAGCAACAACAATTCGAT
AAAGTTCATGCAAAACTAGATAATCTGGTTAAAACAGTTGAAGATAACCCTGACCTTACATCTGCGCTGAAAGAAACAAT
CCATCAATATGAAAAGCAAATGACTGATATTTCAAAGCAAATCAATCTACTCAAACAAAAACAAAATGAAGATAAGTCAT
CTTATGATACAAAGCAATTATCTGTACTATTACGACGTATATTTCAAAATATAGAATCTATGGACAAAACACAAATCAAA
GCATTATTTCTTACCATTATTGACCATATTGATATTCGAAAAGATAGTAATCATAAAAAGCAATTCTATGTCACACTGAA
ACTCAATAATGACATCATTAAACAACTTTTCAATAATTCTCCACTCGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Recombinase (Recombinase)

(181-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

82.103

100

0.821

Multiple sequence alignment