Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BK815_RS07815 Genome accession   NZ_CP018199
Coordinates   1575253..1576623 (-) Length   456 a.a.
NCBI ID   WP_073505024.1    Uniprot ID   -
Organism   Staphylococcus succinus strain 14BME20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1570253..1581623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS07800 cysE 1571276..1571887 (-) 612 WP_244271445.1 serine O-acetyltransferase -
  BK815_RS07805 gltX 1572269..1573723 (-) 1455 WP_069824871.1 glutamate--tRNA ligase -
  BK815_RS07810 - 1574116..1575174 (-) 1059 WP_073505023.1 PIN/TRAM domain-containing protein -
  BK815_RS07815 radA 1575253..1576623 (-) 1371 WP_073505024.1 DNA repair protein RadA Machinery gene
  BK815_RS07820 - 1576998..1579460 (-) 2463 WP_073505025.1 ATP-dependent Clp protease ATP-binding subunit -
  BK815_RS07825 - 1579475..1580485 (-) 1011 WP_046837689.1 protein arginine kinase -
  BK815_RS07830 - 1580478..1581029 (-) 552 WP_073505026.1 UvrB/UvrC motif-containing protein -
  BK815_RS07835 - 1581048..1581509 (-) 462 WP_046837687.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50244.68 Da        Isoelectric Point: 7.4326

>NTDB_id=207085 BK815_RS07815 WP_073505024.1 1575253..1576623(-) (radA) [Staphylococcus succinus strain 14BME20]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEVVEQKTASPKHGVRTRDNVSKVQKLNDIKQETTPRVKSKSDEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLNQTKLRAERLDEDSSQLNVFAETDLEIIHETV
KQLKPDLLVVDSIQTIFHPEINSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVANPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIVVATASSFKDQAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPETNIGGWQFPSDIKVIGVKSVNDALRYALAKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=207085 BK815_RS07815 WP_073505024.1 1575253..1576623(-) (radA) [Staphylococcus succinus strain 14BME20]
TTGGCCAAAAAGAAAGTGATTTTCGAATGTATGGCTTGTGGTTATCAGTCACCAAAATGGATGGGGAAATGTCCAAATTG
TGGTGGTTGGAATCAAATGGAAGAGGTTGTCGAGCAAAAGACAGCGAGTCCGAAGCACGGCGTACGAACTCGCGATAATG
TTTCTAAAGTGCAGAAGTTAAATGATATCAAACAAGAAACTACACCGCGTGTTAAGAGTAAGTCAGATGAATTTAATCGC
GTGCTAGGTGGCGGGATTGTGAATGGTTCATTAGTCTTGATTGGTGGAGACCCTGGTATAGGGAAGTCCACATTATTATT
ACAAATTTGTGCAGCGTTGTCGCAGTCACATAATGTTTTATACATCACTGGTGAAGAATCATTAAATCAAACGAAATTGA
GAGCAGAAAGATTGGATGAGGATTCAAGTCAGTTAAATGTGTTTGCTGAAACAGATTTGGAAATTATACATGAAACCGTA
AAACAATTAAAACCAGATTTGCTTGTTGTCGATTCTATCCAAACTATATTTCATCCTGAAATTAATTCAGCACCTGGTTC
CGTTTCGCAAGTCAGAGAAAGCACCCAAAGCCTTATGAATATTGCTAAGCAAATGAATATCGCAACATTTATTGTCGGGC
ATGTTACAAAAGAAGGTCAAATTGCTGGTCCGCGTTTATTAGAACACATGGTGGATACTGTTCTTTATTTTGAAGGCGAT
GAACATCACGCCTATCGTATTTTAAGAGCAGTAAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATTTTTGAAATGAA
GCAAAGTGGATTAAAAGGTGTTGCAAACCCTTCTGAAATGTTTTTAGAAGAACGGTCAACTAACGTGCCAGGTTCTACAA
TTGTTTCTACTATGGAAGGTACGAGACCGTTATTGATAGAAGTACAAGCGTTAGTCACTCCTACTACTTTTAATAATCCA
CGACGTATGGCTACAGGTATTGATCATAATCGCTTGAGTTTACTCATGGCTGTATTAGAAAAGAAAGAAAATTATTTACT
TCAACAGCAAGATGCTTATATTAAAGTTGCTGGCGGTGTAAGATTAACCGAACCTGCAGTCGATTTAGGAATCGTTGTAG
CCACAGCTTCAAGCTTTAAAGATCAAGCCGTAGATGGTTTAGATTGCTTTATTGGTGAGGTCGGTCTGACTGGCGAAGTA
AGACGTGTATCACGTATTGAACAACGTGTACAAGAGGCGGCGAAATTAGGTTTTAAACGTGTCATTATTCCAGAAACAAA
TATAGGCGGTTGGCAATTCCCAAGCGATATTAAAGTTATAGGCGTCAAAAGTGTAAACGACGCTTTGAGATACGCTTTAG
CTAAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.217

100

0.658
  radA Streptococcus pneumoniae Rx1

58.59

99.561

0.583
  radA Streptococcus pneumoniae D39

58.59

99.561

0.583
  radA Streptococcus pneumoniae R6

58.59

99.561

0.583
  radA Streptococcus pneumoniae TIGR4

58.59

99.561

0.583
  radA Streptococcus mitis SK321

58.59

99.561

0.583
  radA Streptococcus mitis NCTC 12261

58.59

99.561

0.583

Multiple sequence alignment