Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSL056_RS15985 Genome accession   NZ_CP018197
Coordinates   3076930..3077571 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain KCTC 12796BP     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3071930..3082571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS15950 (BSL056_15975) - 3073056..3073487 (+) 432 WP_044332448.1 Na(+)/H(+) antiporter subunit B -
  BSL056_RS15955 (BSL056_15980) - 3073487..3073828 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  BSL056_RS15960 (BSL056_15985) - 3073821..3075299 (+) 1479 WP_073207239.1 Na+/H+ antiporter subunit D -
  BSL056_RS15965 (BSL056_15990) - 3075306..3075785 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  BSL056_RS15970 (BSL056_15995) - 3075785..3076066 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  BSL056_RS15975 (BSL056_16000) mnhG 3076050..3076424 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  BSL056_RS15980 (BSL056_16005) - 3076517..3076906 (-) 390 WP_044332441.1 hotdog fold thioesterase -
  BSL056_RS15985 (BSL056_16010) comA 3076930..3077571 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  BSL056_RS15990 (BSL056_16015) comP 3077652..3079964 (-) 2313 WP_073207243.1 ATP-binding protein Regulator
  BSL056_RS15995 (BSL056_16020) comX 3080018..3080188 (-) 171 WP_073207246.1 competence pheromone ComX -
  BSL056_RS16000 (BSL056_16025) - 3080185..3081099 (-) 915 WP_024423324.1 polyprenyl synthetase family protein -
  BSL056_RS16005 (BSL056_16030) degQ 3081251..3081391 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  BSL056_RS16010 (BSL056_16035) - 3081897..3082253 (+) 357 WP_052503035.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=207046 BSL056_RS15985 WP_024423322.1 3076930..3077571(-) (comA) [Bacillus safensis strain KCTC 12796BP]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=207046 BSL056_RS15985 WP_024423322.1 3076930..3077571(-) (comA) [Bacillus safensis strain KCTC 12796BP]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment