Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   BSR20_RS02750 Genome accession   NZ_CP018189
Coordinates   540331..541824 (+) Length   497 a.a.
NCBI ID   WP_045772227.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 535331..546824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS02735 (BSR20_02740) - 535697..536593 (+) 897 WP_045772225.1 RluA family pseudouridine synthase -
  BSR20_RS02740 (BSR20_02745) pta 536607..537590 (+) 984 WP_045772226.1 phosphate acetyltransferase -
  BSR20_RS02745 (BSR20_02750) amiA 537827..539797 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  BSR20_RS02750 (BSR20_02755) amiC 540331..541824 (+) 1494 WP_045772227.1 ABC transporter permease Regulator
  BSR20_RS02755 (BSR20_02760) amiD 541824..542750 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  BSR20_RS02760 (BSR20_02765) amiE 542760..543845 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS02765 (BSR20_02770) amiF 543838..544767 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  BSR20_RS02770 (BSR20_02775) - 544820..545605 (-) 786 WP_045772228.1 hypothetical protein -
  BSR20_RS02775 (BSR20_02780) - 545617..546315 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  BSR20_RS02780 (BSR20_02785) - 546320..546697 (-) 378 WP_002884206.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55915.73 Da        Isoelectric Point: 10.0050

>NTDB_id=206909 BSR20_RS02750 WP_045772227.1 540331..541824(+) (amiC) [Streptococcus salivarius strain ICDC3]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKESKQFYATRDVPVLERVFGFYKHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMMTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=206909 BSR20_RS02750 WP_045772227.1 540331..541824(+) (amiC) [Streptococcus salivarius strain ICDC3]
ATGAAAAAATACATTTTATTGAGAACCCTTCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACCATTAT
TTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCAAAGACAGCCGATTCGAAGG
CAAACTATGAAAATACAATCTATGAGCGAATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAAAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAAGCTATTTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTGCATCAATTCAAGGAAAGTAAGCAATTCTATGCGACACGTGATGTGCCTGTACTTGAACGTGTGTTTG
GCTTCTATAAGCACCTCTTTGAATTTGACAATACGGGATGGGTGAAAGATAAAACAAATCCAAACTTGAAACGATACATT
CGAATTGAAAATGATCCAGCTATTGGTTGGTCAGTGGTTGGTTCAGGGACTAAGCATAAATATCTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTCGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGTCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGATGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACGCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATTACAGGGGCAACTTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCTCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.189

100

0.982
  amiC Streptococcus thermophilus LMG 18311

97.183

100

0.972
  amiC Streptococcus thermophilus LMD-9

97.183

100

0.972

Multiple sequence alignment