Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   BSR20_RS02765 Genome accession   NZ_CP018189
Coordinates   543838..544767 (+) Length   309 a.a.
NCBI ID   WP_002886847.1    Uniprot ID   A0AB37CQR1
Organism   Streptococcus salivarius strain ICDC3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 538838..549767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS02750 (BSR20_02755) amiC 540331..541824 (+) 1494 WP_045772227.1 ABC transporter permease Regulator
  BSR20_RS02755 (BSR20_02760) amiD 541824..542750 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  BSR20_RS02760 (BSR20_02765) amiE 542760..543845 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS02765 (BSR20_02770) amiF 543838..544767 (+) 930 WP_002886847.1 ATP-binding cassette domain-containing protein Regulator
  BSR20_RS02770 (BSR20_02775) - 544820..545605 (-) 786 WP_045772228.1 hypothetical protein -
  BSR20_RS02775 (BSR20_02780) - 545617..546315 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  BSR20_RS02780 (BSR20_02785) - 546320..546697 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  BSR20_RS02785 (BSR20_02790) - 546879..547673 (+) 795 WP_013990229.1 HAD-IIB family hydrolase -
  BSR20_RS02790 (BSR20_02795) - 547666..548484 (+) 819 WP_070849823.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35032.08 Da        Isoelectric Point: 6.5101

>NTDB_id=206912 BSR20_RS02765 WP_002886847.1 543838..544767(+) (amiF) [Streptococcus salivarius strain ICDC3]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=206912 BSR20_RS02765 WP_002886847.1 543838..544767(+) (amiF) [Streptococcus salivarius strain ICDC3]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATTTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.706

100

0.987
  amiF Streptococcus thermophilus LMD-9

98.382

100

0.984

Multiple sequence alignment