Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSR19_RS09090 Genome accession   NZ_CP018187
Coordinates   1995335..1995853 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain ICDC2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1990335..2000853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS09070 (BSR19_09200) - 1992241..1993185 (+) 945 WP_004183470.1 magnesium transporter CorA family protein -
  BSR19_RS09075 (BSR19_09205) - 1993254..1993925 (+) 672 WP_048790099.1 DUF1129 domain-containing protein -
  BSR19_RS09080 (BSR19_09210) - 1994042..1994923 (+) 882 WP_156247028.1 DUF4300 family protein -
  BSR19_RS09085 (BSR19_09215) rpsR 1995054..1995293 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  BSR19_RS09090 (BSR19_09220) ssb 1995335..1995853 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  BSR19_RS09095 (BSR19_09225) rpsF 1995865..1996155 (-) 291 WP_003093185.1 30S ribosomal protein S6 -
  BSR19_RS09100 (BSR19_09230) - 1996359..1997312 (+) 954 WP_156247029.1 hypothetical protein -
  BSR19_RS09105 (BSR19_09240) mutY 1998489..1999640 (+) 1152 WP_156247030.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=206870 BSR19_RS09090 WP_002891844.1 1995335..1995853(-) (ssb) [Streptococcus salivarius strain ICDC2]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=206870 BSR19_RS09090 WP_002891844.1 1995335..1995853(-) (ssb) [Streptococcus salivarius strain ICDC2]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACAGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGACATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment