Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   BSR19_RS08370 Genome accession   NZ_CP018187
Coordinates   1843988..1845022 (-) Length   344 a.a.
NCBI ID   WP_414820574.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1838988..1850022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS08345 (BSR19_08455) ilvD 1839220..1840938 (-) 1719 WP_171963636.1 dihydroxy-acid dehydratase -
  BSR19_RS08350 (BSR19_08460) - 1841051..1842232 (+) 1182 WP_156246984.1 NAD(P)/FAD-dependent oxidoreductase -
  BSR19_RS08360 (BSR19_08470) trmB 1842488..1843129 (-) 642 WP_002891657.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BSR19_RS08365 (BSR19_08475) ccrZ 1843139..1843930 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  BSR19_RS08370 (BSR19_08480) pptB 1843988..1845022 (-) 1035 WP_414820574.1 ABC transporter permease Regulator
  BSR19_RS08375 (BSR19_08485) pptA 1845022..1845753 (-) 732 WP_048674716.1 ABC transporter ATP-binding protein Regulator
  BSR19_RS08380 (BSR19_08490) - 1845818..1846237 (+) 420 WP_048790350.1 HIT family protein -
  BSR19_RS08385 (BSR19_08495) - 1846234..1846533 (+) 300 WP_037602683.1 hypothetical protein -
  BSR19_RS11495 - 1846713..1846880 (-) 168 WP_162837453.1 hypothetical protein -
  BSR19_RS08390 (BSR19_08505) - 1847457..1848065 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  BSR19_RS11820 - 1848083..1848208 (-) 126 WP_002884447.1 hypothetical protein -
  BSR19_RS08395 (BSR19_08510) tnpA 1848722..1849195 (-) 474 WP_002891962.1 IS200/IS605 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40008.48 Da        Isoelectric Point: 10.5986

>NTDB_id=206865 BSR19_RS08370 WP_414820574.1 1843988..1845022(-) (pptB) [Streptococcus salivarius strain ICDC2]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWGIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRSYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTSLKSHFAYQRMANLMPVGKDMQVINLKRLISQIVLVLTLVQAICLFDLKFN
LILVGIMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=206865 BSR19_RS08370 WP_414820574.1 1843988..1845022(-) (pptB) [Streptococcus salivarius strain ICDC2]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGATCA
TTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTATTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGGAATCATTCTTGGCTTGCTTGTGCTTTGTCTTTTATTACCTTTCTGGGGGAATATTGCGACTTATTTAGAGCCA
GCTGATAAACATTACCTTTTGGTGAAGGAAGAAGAGGTGCTTGACCATGTTAAGAAGGCAACGGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTCATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTCTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGC
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAGGGGATTACGTCAAGTGTAAAACGCCGTTCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CCTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCTTACGCCTGTTTGCCCTAACG
CTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACGTCCCTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAATCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGTGCTGACTCTGGTCCAGGCTATTTGCCTCTTCGATCTTAAATTTAAC
CTGATCTTGGTTGGAATTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

96.512

100

0.965

  pptB Streptococcus thermophilus LMD-9

91.86

100

0.919


Multiple sequence alignment