Detailed information NTG0206865

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNQ47_RS06790
• Genome accession: NZ_CP023388
• Coordinates: 1327519..1328511 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1105
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1322519..1333511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNQ47_RS06760 (CNQ47_06755)	ispD	1322580..1323290 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CNQ47_RS06765 (CNQ47_06760)	ispF	1323290..1323769 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNQ47_RS06770 (CNQ47_06765)	truD	1323766..1324815 (+)	1050	WP_001683233.1	tRNA pseudouridine(13) synthase TruD	-
CNQ47_RS06775 (CNQ47_06770)	surE	1324796..1325557 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNQ47_RS06780 (CNQ47_06775)	pcm	1325551..1326177 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CNQ47_RS06785 (CNQ47_06780)	nlpD	1326362..1327456 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CNQ47_RS06790 (CNQ47_06785)	rpoS	1327519..1328511 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNQ47_RS06795 (CNQ47_06790)	-	1328689..1329240 (-)	552	WP_001683231.1	flavodoxin family protein	-
CNQ47_RS06800 (CNQ47_06795)	-	1329465..1330508 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
CNQ47_RS06805 (CNQ47_06800)	ygbN	1330651..1332015 (-)	1365	WP_000104433.1	GntP family transporter	-
CNQ47_RS06810 (CNQ47_06805)	ygbM	1332104..1332880 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206865 CNQ47_RS06790 WP_000081550.1 1327519..1328511(+) (rpoS) [Escherichia coli strain 1105]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206865 CNQ47_RS06790 WP_000081550.1 1327519..1328511(+) (rpoS) [Escherichia coli strain 1105]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGAGCACTGCGTGGAGATGTCGCTTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715