Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   BSR19_RS08375 Genome accession   NZ_CP018187
Coordinates   1845022..1845753 (-) Length   243 a.a.
NCBI ID   WP_048674716.1    Uniprot ID   A0AB37DBL9
Organism   Streptococcus salivarius strain ICDC2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840022..1850753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS08350 (BSR19_08460) - 1841051..1842232 (+) 1182 WP_156246984.1 NAD(P)/FAD-dependent oxidoreductase -
  BSR19_RS08360 (BSR19_08470) trmB 1842488..1843129 (-) 642 WP_002891657.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BSR19_RS08365 (BSR19_08475) ccrZ 1843139..1843930 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  BSR19_RS08370 (BSR19_08480) pptB 1843988..1845022 (-) 1035 WP_414820574.1 ABC transporter permease Regulator
  BSR19_RS08375 (BSR19_08485) pptA 1845022..1845753 (-) 732 WP_048674716.1 ABC transporter ATP-binding protein Regulator
  BSR19_RS08380 (BSR19_08490) - 1845818..1846237 (+) 420 WP_048790350.1 HIT family protein -
  BSR19_RS08385 (BSR19_08495) - 1846234..1846533 (+) 300 WP_037602683.1 hypothetical protein -
  BSR19_RS11495 - 1846713..1846880 (-) 168 WP_162837453.1 hypothetical protein -
  BSR19_RS08390 (BSR19_08505) - 1847457..1848065 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  BSR19_RS11820 - 1848083..1848208 (-) 126 WP_002884447.1 hypothetical protein -
  BSR19_RS08395 (BSR19_08510) tnpA 1848722..1849195 (-) 474 WP_002891962.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26846.09 Da        Isoelectric Point: 4.4799

>NTDB_id=206866 BSR19_RS08375 WP_048674716.1 1845022..1845753(-) (pptA) [Streptococcus salivarius strain ICDC2]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDSASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGDDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=206866 BSR19_RS08375 WP_048674716.1 1845022..1845753(-) (pptA) [Streptococcus salivarius strain ICDC2]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTAGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATTCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTTATGATTATCTGTGCCTTTATTGTTAACCCCAGTCTTTTCATTGTTGATGAACCCTTC
TTGGGTTTGGATCCCTTGGCAATCTCCGACCTAATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCGATTCTCAT
GTCTACCCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATCTTGCATCACGGTCAAGTCTTAGCACAGG
GGACTCTCGAGGAGCTCCGTCAGACTTTTGGCGACGATAGTGCTAGTCTTAACGATATCTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

99.177

100

0.992
  pptA Streptococcus thermophilus LMD-9

97.119

100

0.971

Multiple sequence alignment