Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSR14_RS08990 Genome accession   NZ_CP018186
Coordinates   1952807..1953325 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain ICDC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1947807..1958325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS08970 (BSR14_09070) - 1949725..1950669 (+) 945 WP_013991181.1 magnesium transporter CorA family protein -
  BSR14_RS08975 (BSR14_09075) - 1950739..1951410 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  BSR14_RS08980 (BSR14_09080) - 1951521..1952402 (+) 882 WP_004183473.1 DUF4300 family protein -
  BSR14_RS08985 (BSR14_09085) rpsR 1952526..1952765 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  BSR14_RS08990 (BSR14_09090) ssb 1952807..1953325 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  BSR14_RS08995 (BSR14_09095) rpsF 1953337..1953627 (-) 291 WP_045771666.1 30S ribosomal protein S6 -
  BSR14_RS09000 (BSR14_09100) - 1953828..1954781 (+) 954 WP_045769125.1 hypothetical protein -
  BSR14_RS09005 (BSR14_09105) mutY 1955949..1957100 (+) 1152 WP_014632598.1 A/G-specific adenine glycosylase -
  BSR14_RS09010 (BSR14_09110) - 1957398..1957658 (-) 261 WP_002884687.1 hypothetical protein -
  BSR14_RS10620 (BSR14_09115) - 1957679..1958080 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=206805 BSR14_RS08990 WP_002891844.1 1952807..1953325(-) (ssb) [Streptococcus salivarius strain ICDC1]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=206805 BSR14_RS08990 WP_002891844.1 1952807..1953325(-) (ssb) [Streptococcus salivarius strain ICDC1]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment