Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   BSR14_RS08210 Genome accession   NZ_CP018186
Coordinates   1789731..1790768 (-) Length   345 a.a.
NCBI ID   WP_156209918.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1784731..1795768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS08185 (BSR14_08265) ilvD 1785002..1786720 (-) 1719 WP_170314552.1 dihydroxy-acid dehydratase -
  BSR14_RS08190 (BSR14_08270) - 1786833..1788014 (+) 1182 WP_013991068.1 NAD(P)/FAD-dependent oxidoreductase -
  BSR14_RS08200 (BSR14_08280) trmB 1788231..1788872 (-) 642 WP_156209917.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BSR14_RS08205 (BSR14_08285) ccrZ 1788882..1789673 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  BSR14_RS08210 (BSR14_08290) pptB 1789731..1790768 (-) 1038 WP_156209918.1 ABC transporter permease Regulator
  BSR14_RS08215 (BSR14_08295) pptA 1790765..1791496 (-) 732 WP_156209919.1 ABC transporter ATP-binding protein Regulator
  BSR14_RS08220 (BSR14_08300) - 1791561..1791980 (+) 420 WP_156209920.1 HIT family protein -
  BSR14_RS08225 (BSR14_08305) - 1791977..1792276 (+) 300 WP_156209921.1 hypothetical protein -
  BSR14_RS08230 (BSR14_08310) - 1792743..1793108 (-) 366 WP_156209922.1 hypothetical protein -
  BSR14_RS08235 (BSR14_08315) - 1793201..1793809 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  BSR14_RS10565 - 1793827..1793952 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40107.60 Da        Isoelectric Point: 10.5703

>NTDB_id=206799 BSR14_RS08210 WP_156209918.1 1789731..1790768(-) (pptB) [Streptococcus salivarius strain ICDC1]
MIAKLFMERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAVLKYFIFQKKAQPFYRQS
GLNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRSYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLVLTLVQAICLFDFKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=206799 BSR14_RS08210 WP_156209918.1 1789731..1790768(-) (pptB) [Streptococcus salivarius strain ICDC1]
ATGATAGCTAAGCTATTTATGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGA
TCACTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTCTTGGTCCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAGA
ATCCGTGGGCAATCATTCTTGGTTTGCTTGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAG
CCAGCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAAGTGCTAGACCATGTTAAGAAGGCAACGGGGCGTGCTTTTAG
ATTTTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCCCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTGTTCTTAAGTATTTTATTTTCCAGAAAAAGGCCCAACCTTTTTATAGACAGTCT
GGCCTGAATTGGACTGAGGCTATTGCAGCGGAAAACAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGGATTACGTCGAGTGTTAAACGCCGTTCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGGGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGACTTTTTGCTTTA
ACGCTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACAGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAA
GCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGTACTGACTTTGGTACAGGCTATTTGTCTCTTCGACTTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

96.221

99.71

0.959

  pptB Streptococcus thermophilus LMD-9

91.279

99.71

0.91


Multiple sequence alignment