Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   BSR14_RS08215 Genome accession   NZ_CP018186
Coordinates   1790765..1791496 (-) Length   243 a.a.
NCBI ID   WP_156209919.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785765..1796496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR14_RS08190 (BSR14_08270) - 1786833..1788014 (+) 1182 WP_013991068.1 NAD(P)/FAD-dependent oxidoreductase -
  BSR14_RS08200 (BSR14_08280) trmB 1788231..1788872 (-) 642 WP_156209917.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BSR14_RS08205 (BSR14_08285) ccrZ 1788882..1789673 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  BSR14_RS08210 (BSR14_08290) pptB 1789731..1790768 (-) 1038 WP_156209918.1 ABC transporter permease Regulator
  BSR14_RS08215 (BSR14_08295) pptA 1790765..1791496 (-) 732 WP_156209919.1 ABC transporter ATP-binding protein Regulator
  BSR14_RS08220 (BSR14_08300) - 1791561..1791980 (+) 420 WP_156209920.1 HIT family protein -
  BSR14_RS08225 (BSR14_08305) - 1791977..1792276 (+) 300 WP_156209921.1 hypothetical protein -
  BSR14_RS08230 (BSR14_08310) - 1792743..1793108 (-) 366 WP_156209922.1 hypothetical protein -
  BSR14_RS08235 (BSR14_08315) - 1793201..1793809 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  BSR14_RS10565 - 1793827..1793952 (-) 126 WP_002884447.1 hypothetical protein -
  BSR14_RS08240 (BSR14_08320) - 1794389..1796494 (-) 2106 WP_049529235.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26889.11 Da        Isoelectric Point: 4.4743

>NTDB_id=206800 BSR14_RS08215 WP_156209919.1 1790765..1791496(-) (pptA) [Streptococcus salivarius strain ICDC1]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDSASYRQKIGYIP
ETPNLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLDELRQTFGDDSTSLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=206800 BSR14_RS08215 WP_156209919.1 1790765..1791496(-) (pptA) [Streptococcus salivarius strain ICDC1]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACCTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACCATTCAGCAAGATTCAGCTAGCTATCGTCAGAAGATTGGTTACATCCCT
GAAACCCCAAACCTCTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTTAAGCTCTTTCGTTTAGATGAAAAGCTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTC
TTGGGCTTGGACCCCTTGGCAATCTCAGACTTAATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCAATTCTCAT
GTCTACACACGTTTTGGATTCGGCTGAGAAGATGTGCGACCGCTTCGTGATTTTGCATCATGGACAGGTCTTAGCACAGG
GAACTCTTGATGAGCTCCGTCAGACTTTTGGCGATGATAGTACTAGTCTTAACGATATCTACATGCAGCTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

97.942

100

0.979
  pptA Streptococcus thermophilus LMD-9

96.708

100

0.967

Multiple sequence alignment