Detailed information NTG0020669

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: SMA_1383
• Genome accession: HE613569
• Coordinates: 1351629..1352327 (+)
• Length: 232 a.a.
• NCBI ID: CCF02674.1
• Uniprot ID: -
• Organism: Streptococcus macedonicus ACA-DC 198
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1346629..1357327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMA_1379	mcdA1	1349130..1349291 (-)	162	CCF02670.1	putative type-A lantibiotic, similar to ScnA1	-
SMA_1380	mcdA2	1349756..1349911 (-)	156	CCF02671.1	Lantibiotic macedocin precursor	-
SMA_1381	mcdA	1349940..1350095 (-)	156	CCF02672.1	Lantibiotic macedocin precursor	-
SMA_1382	tnp	1350339..1351514 (+)	1176	CCF02673.1	IS1191, transposase, IS256 family	-
SMA_1383	scnR	1351629..1352327 (+)	699	CCF02674.1	putative response regulator, similar to ScnR	Regulator
SMA_1384	mcdK	1352344..1353705 (+)	1362	CCF02675.1	putative histidine kinase, similar to ScnK	-
SMA_1385	-	1353785..1355650 (-)	1866	CCF02676.1	putative relaxase	-
SMA_1386	-	1355637..1356002 (-)	366	CCF02677.1	Hypothetical protein	-
SMA_1387	-	1356012..1356371 (-)	360	CCF02678.1	Hypothetical protein	-

Sequence

Protein

• Length: 232 a.a.
• Molecular weight: 26055.06 Da
• Isoelectric Point: 7.1342

>NTDB_id=20669 SMA_1383 CCF02674.1 1351629..1352327(+) (scnR) [Streptococcus macedonicus ACA-DC 198]
MNFETQFLNKRILIIDDDVSLSQSIKEVLVNRGFKNISNAYSISEGIDIFSVSKIDFIILDVMLPDGEGYLLAKYVRKTS
DIPILFLTAKNNPDDEVKGLGSGGDDFVTKPFLPKTLIYRIIALLRRAYKNESELITLSSCTIDLNNASVNKNGNQLSLT
PTEIQILRKLYSNKNYIVSTETICDTIWGLDSSGYEKSLMVHIRNIREKIESSPSKPDHLITVKGLGYKLVV

Nucleotide

• Length: 699 bp

>NTDB_id=20669 SMA_1383 CCF02674.1 1351629..1352327(+) (scnR) [Streptococcus macedonicus ACA-DC 198]
ATGAATTTTGAAACACAGTTTTTAAACAAACGGATATTAATAATAGATGACGATGTCTCACTTAGTCAATCTATCAAAGA
GGTATTAGTCAATAGAGGATTTAAAAATATTAGTAACGCTTATAGTATTAGCGAGGGCATTGATATTTTTTCTGTATCCA
AGATTGATTTCATCATATTAGATGTAATGTTACCTGATGGTGAGGGGTATTTACTTGCCAAATATGTTAGAAAAACTTCT
GATATTCCAATATTATTTTTAACAGCAAAAAATAATCCTGATGATGAAGTTAAAGGCCTTGGATCAGGTGGTGATGATTT
TGTCACTAAACCATTTCTCCCGAAAACCTTAATATATCGTATCATTGCTCTATTAAGAAGAGCATACAAAAATGAATCCG
AATTAATTACATTGTCTTCTTGTACCATTGATTTAAATAATGCAAGTGTAAATAAAAATGGAAATCAACTTTCACTAACT
CCTACTGAAATACAGATACTACGAAAACTATACAGTAATAAGAACTACATTGTTTCAACAGAAACAATTTGTGATACTAT
TTGGGGACTTGATAGTTCTGGATATGAAAAGTCATTAATGGTACACATTCGAAATATAAGAGAAAAAATAGAATCAAGCC
CTTCTAAACCGGATCATCTTATTACCGTTAAAGGTCTTGGATATAAGCTTGTTGTCTGA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (12-121)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (154-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	41.593	97.414	0.405
vicR	Streptococcus mutans UA159	37.118	98.707	0.366
micA	Streptococcus pneumoniae Cp1015	36.522	99.138	0.362