Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CNQ51_RS09110 Genome accession   NZ_CP023371
Coordinates   1801809..1803236 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain 1283     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1796809..1808236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ51_RS09085 (CNQ51_09080) yeeZ 1796864..1797688 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CNQ51_RS09090 (CNQ51_09085) yeeY 1797734..1798663 (+) 930 WP_024195433.1 LysR substrate-binding domain-containing protein -
  CNQ51_RS25875 yoeI 1798878..1798940 (+) 63 WP_010723108.1 membrane protein YoeI -
  CNQ51_RS09095 (CNQ51_09090) plaP 1798930..1800288 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CNQ51_RS09100 (CNQ51_09095) tsuA 1800467..1801525 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  CNQ51_RS09105 (CNQ51_09100) tsuB 1801539..1801766 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CNQ51_RS09110 (CNQ51_09105) sbcB 1801809..1803236 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  CNQ51_RS09115 (CNQ51_09110) dacD 1803445..1804611 (+) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CNQ51_RS09120 (CNQ51_09115) sbmC 1804730..1805203 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  CNQ51_RS09125 (CNQ51_09120) yeeA 1805401..1806459 (+) 1059 WP_001200895.1 FUSC family protein -
  CNQ51_RS09130 (CNQ51_09125) tmaR 1806631..1806960 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ51_RS26455 - 1807061..1807426 (-) 366 WP_224446746.1 EutP/PduV family microcompartment system protein -
  CNQ51_RS09150 (CNQ51_09145) - 1807476..1808173 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=206552 CNQ51_RS09110 WP_000980603.1 1801809..1803236(-) (sbcB) [Escherichia coli strain 1283]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=206552 CNQ51_RS09110 WP_000980603.1 1801809..1803236(-) (sbcB) [Escherichia coli strain 1283]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment