Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BP422_RS10900 Genome accession   NZ_CP018145
Coordinates   2390612..2391325 (+) Length   237 a.a.
NCBI ID   WP_088907744.1    Uniprot ID   A0A220MFX8
Organism   Brevibacillus formosus strain NF2     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2385612..2396325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS10880 (BP422_10575) - 2387250..2387792 (+) 543 WP_088907740.1 hypothetical protein -
  BP422_RS10885 (BP422_10580) - 2388055..2388786 (-) 732 WP_088907741.1 ABC transporter permease -
  BP422_RS10890 (BP422_10585) - 2388799..2389548 (-) 750 WP_088907742.1 ABC transporter permease -
  BP422_RS10895 (BP422_10590) - 2389548..2390459 (-) 912 WP_088907743.1 ABC transporter ATP-binding protein -
  BP422_RS10900 (BP422_10595) scnR 2390612..2391325 (+) 714 WP_088907744.1 response regulator transcription factor Regulator
  BP422_RS10905 (BP422_10600) - 2391326..2392708 (+) 1383 WP_088907745.1 sensor histidine kinase -
  BP422_RS10910 (BP422_10605) - 2392796..2393827 (-) 1032 WP_088907746.1 ABC transporter substrate-binding protein -
  BP422_RS10915 (BP422_10610) - 2393824..2394582 (-) 759 WP_088907747.1 ABC transporter permease -
  BP422_RS10920 (BP422_10615) - 2394582..2395364 (-) 783 WP_088907748.1 ABC transporter ATP-binding protein -
  BP422_RS10925 (BP422_10620) tenA 2395349..2396029 (-) 681 WP_088907749.1 thiaminase II -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27134.50 Da        Isoelectric Point: 5.4349

>NTDB_id=206367 BP422_RS10900 WP_088907744.1 2390612..2391325(+) (scnR) [Brevibacillus formosus strain NF2]
MEEWKQKKVLIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALGICASDKLDVAILDVMLPDGDGFGLLTSIRRFSQIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPQIDRLPVFQLGDSTIDLEAAIVTRDHHEYAL
TAKEHALLRKLYENRGRIVTSDTLCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSTPEYLLTVRGLGYKLLVKEEL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=206367 BP422_RS10900 WP_088907744.1 2390612..2391325(+) (scnR) [Brevibacillus formosus strain NF2]
ATGGAAGAGTGGAAACAGAAAAAAGTGCTCATCGTGGAAGATGAGCTTGAAATCAGAAATATGATCGATGGATTTTTGCG
TAAGGAAGGATTCTCTCGTATTTTTCATGCGGGTAGTTGTAAAGAGGCGTTAGGGATATGCGCTTCGGACAAGCTAGATG
TCGCGATCCTGGATGTCATGCTGCCTGATGGAGATGGATTTGGACTTTTGACTTCGATCCGTCGCTTCTCGCAAATCCCT
GTCATTTTTCTGTCAGCGAGAGGGGAAGATGAAGATCGATTGCTCGGACTTGGTCTAGGCGCTGACGACTATATCGTGAA
GCCATTTTTGCCGCGCGAGCTCGTTCTTCGACTCCTGGTCATTTTACGACGCGTTTACGCTCCTCCCCAAATCGATCGTC
TGCCCGTTTTCCAGCTTGGTGACAGTACGATCGATTTGGAGGCAGCAATCGTGACGAGAGATCACCACGAATACGCTTTG
ACTGCCAAGGAACACGCCCTCTTGCGAAAACTCTATGAAAATCGCGGACGAATCGTCACGAGTGATACCCTGTGCCAATC
CGTATGGGGGGACGATTACTACGGGTATGAAAACACGCTGATGGTTCATATGAGGCGCATTCGCGAAAAGATCGAGCCAT
GTCCGTCCACTCCTGAATATTTGTTGACGGTAAGAGGACTCGGGTACAAATTACTCGTAAAGGAAGAGTTGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220MFX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.87

97.046

0.494
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401
  vicR Streptococcus mutans UA159

41.048

96.624

0.397

Multiple sequence alignment