Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   DN94_07900 Genome accession   CP007565
Coordinates   1535445..1535954 (-) Length   169 a.a.
NCBI ID   AHX75563.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1530445..1540954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_07875 - 1530955..1531965 (-) 1011 AHX75558.1 tRNA threonylcarbamoyladenosine biosynthesis protein Gcp -
  DN94_07880 - 1532041..1532448 (-) 408 AHX75559.1 alanine acetyltransferase -
  DN94_07885 - 1532450..1533142 (-) 693 AHX75560.1 peptidase M22 -
  DN94_07890 - 1533320..1533550 (+) 231 AHX75561.1 hypothetical protein -
  DN94_07895 - 1533604..1535283 (+) 1680 AHX75562.1 ribonuclease J -
  DN94_07900 lytF 1535445..1535954 (-) 510 AHX75563.1 amidase Regulator
  DN94_07905 - 1536102..1537448 (-) 1347 AHX75564.1 glutamine synthetase -
  DN94_07910 - 1537482..1537853 (-) 372 AHX75565.1 MerR family transcriptional regulator -
  DN94_07915 - 1537933..1538472 (-) 540 AHX75566.1 membrane protein -
  DN94_07920 - 1538735..1539931 (-) 1197 AHX75567.1 phosphoglycerate kinase -
  DN94_07925 - 1540066..1540935 (-) 870 AHX75568.1 5'-nucleotidase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18346.29 Da        Isoelectric Point: 4.4192

>NTDB_id=20584 DN94_07900 AHX75563.1 1535445..1535954(-) (lytF) [Streptococcus agalactiae strain 138spar]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFEPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=20584 DN94_07900 AHX75563.1 1535445..1535954(-) (lytF) [Streptococcus agalactiae strain 138spar]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGAACCACAAAATACAGTGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

56.818

78.107

0.444
  lytF Streptococcus gordonii str. Challis substr. CH1

56.818

78.107

0.444
  SMU.836 Streptococcus mutans UA159

54.331

75.148

0.408

Multiple sequence alignment