Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BRL64_RS16865 Genome accession   NZ_CP018100
Coordinates   3218213..3219610 (-) Length   465 a.a.
NCBI ID   WP_139142199.1    Uniprot ID   -
Organism   Bacillus safensis strain BRM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3213213..3224610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL64_RS16830 (BRL64_16535) flgL 3213414..3214322 (-) 909 WP_081124903.1 flagellar hook-associated protein FlgL -
  BRL64_RS16835 (BRL64_16540) flgK 3214332..3215852 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  BRL64_RS16840 (BRL64_16545) - 3215868..3216350 (-) 483 WP_024423619.1 flagellar protein FlgN -
  BRL64_RS16845 (BRL64_16550) flgM 3216369..3216632 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  BRL64_RS16850 (BRL64_16555) - 3216712..3217131 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  BRL64_RS19630 (BRL64_16560) comFC 3217188..3217844 (-) 657 WP_231293932.1 ComF family protein Machinery gene
  BRL64_RS16860 (BRL64_16565) - 3217871..3218164 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  BRL64_RS16865 (BRL64_16570) comFA 3218213..3219610 (-) 1398 WP_139142199.1 DEAD/DEAH box helicase Machinery gene
  BRL64_RS16870 (BRL64_16575) - 3219731..3220573 (-) 843 WP_024423625.1 DegV family protein -
  BRL64_RS16875 (BRL64_16580) degU 3220789..3221478 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BRL64_RS16880 (BRL64_16585) degS 3221543..3222718 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BRL64_RS16885 (BRL64_16590) - 3222939..3223607 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52940.90 Da        Isoelectric Point: 9.9510

>NTDB_id=205787 BRL64_RS16865 WP_139142199.1 3218213..3219610(-) (comFA) [Bacillus safensis strain BRM1]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHKHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=205787 BRL64_RS16865 WP_139142199.1 3218213..3219610(-) (comFA) [Bacillus safensis strain BRM1]
TTGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACTCCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACAAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTACG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512

Multiple sequence alignment