Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BRL64_RS08745 Genome accession   NZ_CP018100
Coordinates   1696675..1697925 (+) Length   416 a.a.
NCBI ID   WP_070325846.1    Uniprot ID   -
Organism   Bacillus safensis strain BRM1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1691675..1702925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL64_RS08720 (BRL64_08565) ymfI 1693095..1693826 (+) 732 WP_081124409.1 elongation factor P 5-aminopentanone reductase -
  BRL64_RS08725 (BRL64_08570) - 1693900..1694157 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  BRL64_RS08730 (BRL64_08575) - 1694289..1695080 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BRL64_RS08735 (BRL64_08580) - 1695104..1696003 (+) 900 WP_061109885.1 helix-turn-helix domain-containing protein -
  BRL64_RS08740 (BRL64_08585) pgsA 1696077..1696658 (+) 582 WP_081124410.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BRL64_RS08745 (BRL64_08590) cinA 1696675..1697925 (+) 1251 WP_070325846.1 competence/damage-inducible protein A Machinery gene
  BRL64_RS08750 (BRL64_08595) recA 1698103..1699146 (+) 1044 WP_034281901.1 recombinase RecA Machinery gene
  BRL64_RS08755 (BRL64_08600) rny 1699455..1701017 (+) 1563 WP_003211958.1 ribonuclease Y -
  BRL64_RS08760 (BRL64_08605) - 1701108..1701902 (+) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  BRL64_RS08765 (BRL64_08610) spoVS 1702104..1702364 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45580.64 Da        Isoelectric Point: 4.7944

>NTDB_id=205763 BRL64_RS08745 WP_070325846.1 1696675..1697925(+) (cinA) [Bacillus safensis strain BRM1]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASSLGKELVLNEEAFESIQDYFRKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=205763 BRL64_RS08745 WP_070325846.1 1696675..1697925(+) (cinA) [Bacillus safensis strain BRM1]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCTCGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGACGCTCAAACGAATCCGACAATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTGGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
ATCCAAAGCCTTGCACGAGCACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGAGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment