Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   YA91_RS20855 Genome accession   NZ_CP023248
Coordinates   2708275..2709003 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain MAVP-26     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2703275..2714003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YA91_RS20840 (YA91_22280) clpC 2703710..2706283 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  YA91_RS20845 (YA91_22285) pgeF 2706431..2707159 (-) 729 WP_005497226.1 peptidoglycan editing factor PgeF -
  YA91_RS20850 (YA91_22290) rluD 2707161..2708138 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  YA91_RS20855 (YA91_22295) comL 2708275..2709003 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  YA91_RS20860 (YA91_22300) - 2709138..2710619 (+) 1482 WP_021447381.1 lytic transglycosylase F -
  YA91_RS20865 (YA91_22305) raiA 2710950..2711276 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  YA91_RS20870 (YA91_22310) pheA 2711520..2712698 (+) 1179 WP_005468591.1 prephenate dehydratase -
  YA91_RS20875 (YA91_22315) yjjX 2712723..2713256 (+) 534 WP_005497220.1 inosine/xanthosine triphosphatase -
  YA91_RS20880 (YA91_22320) trpR 2713305..2713616 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=205577 YA91_RS20855 WP_005460312.1 2708275..2709003(+) (comL) [Vibrio parahaemolyticus strain MAVP-26]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=205577 YA91_RS20855 WP_005460312.1 2708275..2709003(+) (comL) [Vibrio parahaemolyticus strain MAVP-26]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ATCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCACTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment