Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DN94_03610 Genome accession   CP007565
Coordinates   673508..674104 (+) Length   198 a.a.
NCBI ID   AHX74800.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 668508..679104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03595 - 669692..670450 (+) 759 AHX74797.1 triosephosphate isomerase -
  DN94_03600 - 670627..671319 (+) 693 AHX74798.1 phosphoglycerate mutase -
  DN94_03605 - 671448..673493 (+) 2046 AHX74799.1 penicillin-binding protein 2B -
  DN94_03610 recR 673508..674104 (+) 597 AHX74800.1 recombinase Machinery gene
  DN94_03615 - 674245..675291 (+) 1047 AHX74801.1 D-alanine--D-alanine ligase -
  DN94_03620 - 675438..676805 (+) 1368 AHX74802.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DN94_03625 - 676994..678214 (+) 1221 AHX74803.1 MFS transporter -
  DN94_03630 - 678343..679029 (+) 687 AHX74804.1 membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21619.82 Da        Isoelectric Point: 4.5632

>NTDB_id=20549 DN94_03610 AHX74800.1 673508..674104(+) (recR) [Streptococcus agalactiae strain 138spar]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQS
VILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=20549 DN94_03610 AHX74800.1 673508..674104(+) (recR) [Streptococcus agalactiae strain 138spar]
ATGCTTTACCCAACACCAATTGCTAAATTGATTGACAGCTTTTCAAAATTACCGGGTATAGGTACTAAAACAGCAACACG
TTTAGCTTTTTACACTATTGGTATGAGTGATGAAGATGTTAATGAATTTGCTAAGAATTTATTAGCTGCTAAGCGGGAAT
TAACCTATTGTTCTGTTTGTGGTAATTTGACTGATGATGATCCTTGCTTAATTTGTACAGATAAGACGCGTGACCAGTCT
GTTATCTTGGTTGTTGAAGATAGCAAAGATGTGTCAGCTATGGAAAAAATTCAAGAGTATAATGGTTTGTATCATGTCTT
ACATGGCTTAATTTCACCTATGAATGGTATTAGCCCTGATGACATTAATTTGAAAAGTTTAATTACTCGATTGATGGATG
GTCAGGTGACAGAAGTTATTGTTGCTACCAATGCGACTGCTGATGGTGAAGCTACATCAATGTATATTTCACGAGTCTTA
AAACCAGCTGGTATCAAAGTGACACGATTAGCGAGAGGTTTAGCTGTTGGTTCAGATATCGAATATGCAGATGAAGTAAC
CTTGCTTCGAGCAATCGAAAATCGTACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment