Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L985_RS16695 Genome accession   NZ_CP018057
Coordinates   3238198..3238716 (-) Length   172 a.a.
NCBI ID   WP_023469850.1    Uniprot ID   -
Organism   Exiguobacterium sp. ZWU0009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3233198..3243716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L985_RS16675 dnaB 3233992..3235344 (-) 1353 WP_023469846.1 replicative DNA helicase -
  L985_RS16680 rplI 3235364..3235807 (-) 444 WP_023469847.1 50S ribosomal protein L9 -
  L985_RS16685 - 3235804..3237789 (-) 1986 WP_047394945.1 DHH family phosphoesterase -
  L985_RS16690 rpsR 3237924..3238154 (-) 231 WP_023469849.1 30S ribosomal protein S18 -
  L985_RS16695 ssb 3238198..3238716 (-) 519 WP_023469850.1 single-stranded DNA-binding protein Machinery gene
  L985_RS16700 rpsF 3238740..3239027 (-) 288 WP_023469851.1 30S ribosomal protein S6 -
  L985_RS16705 ychF 3239148..3240248 (-) 1101 WP_029343022.1 redox-regulated ATPase YchF -
  L985_RS16710 - 3240477..3240665 (-) 189 WP_023469853.1 DUF951 domain-containing protein -
  L985_RS16715 - 3240637..3241566 (-) 930 WP_023469854.1 mechanosensitive ion channel family protein -
  L985_RS16720 yyaC 3241750..3242367 (+) 618 WP_034786343.1 spore protease YyaC -
  L985_RS16725 - 3242404..3243168 (-) 765 WP_029343024.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18544.19 Da        Isoelectric Point: 4.9901

>NTDB_id=205450 L985_RS16695 WP_023469850.1 3238198..3238716(-) (ssb) [Exiguobacterium sp. ZWU0009]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKEGQRRYRAEVVADSVRFLESRNASRSSDGSEGYASSTGGNGNAAGWGSQQQQNNSSSPAPASSNSGFGADPFSGG
SSIDLSDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=205450 L985_RS16695 WP_023469850.1 3238198..3238716(-) (ssb) [Exiguobacterium sp. ZWU0009]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCGGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCATGTGACCGTCCTTTCACAGGGCAAGATGGGAAGCGAGAAGCTGATTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAGAAAGGTAGTCTTGCTGGTGTAGAGGGTCGCCTCCAGATTAGC
AGCTACGACGATAAAGAAGGGCAACGCCGTTATCGTGCGGAAGTCGTCGCTGATAGCGTCCGCTTCCTTGAGTCACGTAA
CGCGAGCCGTTCTTCGGATGGTAGCGAAGGCTACGCTTCATCTACTGGTGGAAACGGGAATGCTGCAGGATGGGGTTCAC
AGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTCAGCGGTGGT
AGTTCGATCGACCTTTCAGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.547
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.222

100

0.547

Multiple sequence alignment