Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BOP93_RS15880 Genome accession   NZ_CP018049
Coordinates   3552695..3554920 (-) Length   741 a.a.
NCBI ID   WP_104503393.1    Uniprot ID   A0A2L0RY93
Organism   Pseudomonas orientalis strain F9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3547695..3559920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS15845 (BOP93_15340) murB 3548064..3549083 (-) 1020 WP_104503389.1 UDP-N-acetylmuramate dehydrogenase -
  BOP93_RS15850 (BOP93_15345) - 3549080..3549544 (-) 465 WP_104503390.1 low molecular weight protein-tyrosine-phosphatase -
  BOP93_RS15855 (BOP93_15350) kdsB 3549544..3550308 (-) 765 WP_104503391.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BOP93_RS15860 (BOP93_15355) - 3550305..3550490 (-) 186 WP_003174668.1 Trm112 family protein -
  BOP93_RS15865 (BOP93_15360) lpxK 3550515..3551525 (-) 1011 WP_104503392.1 tetraacyldisaccharide 4'-kinase -
  BOP93_RS15870 (BOP93_15365) - 3551525..3551953 (-) 429 WP_065884989.1 biopolymer transporter ExbD -
  BOP93_RS15875 (BOP93_15370) exbB 3551950..3552585 (-) 636 WP_104505301.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BOP93_RS15880 (BOP93_15375) comA 3552695..3554920 (-) 2226 WP_104503393.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BOP93_RS15885 (BOP93_15380) - 3555056..3555571 (+) 516 WP_065894963.1 DUF2062 domain-containing protein -
  BOP93_RS15890 (BOP93_15385) - 3555875..3558628 (+) 2754 WP_104503394.1 response regulator -
  BOP93_RS15895 (BOP93_15390) - 3558799..3559788 (+) 990 WP_104503395.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80614.83 Da        Isoelectric Point: 11.2295

>NTDB_id=205356 BOP93_RS15880 WP_104503393.1 3552695..3554920(-) (comA) [Pseudomonas orientalis strain F9]
MRTGMFALALGLLTLRFLPALPPTGWLLAMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWVEG
RVVGLPQQTDTGVRFELADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLRRPSGLLNFHGVDHEAWLLAQRIGATG
SVKDGQRLAPARNALRDSLRQRLMATDAQTHEAALAALVLGDGSGLRAEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRHLPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAVLILTFGGRLGPWGLWQAWTRPQWLIAIGLFPILLVLGLPISLTAPLANVFAVPWISLVVLPLAL
LGTALLWVPVIGDGLLWLAGGALEGWFKVLALLAGQLPAWTPAQVPLVYWLVSLLGALMLLLPKGVPFRLLGWPMLLLAV
FPPRESIPHGQVRVVQLDVGQGQALILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKLGIERLDMLLLSHADADHAGGA
AAIARGLPIARVVGGETEGLPAFLGTGPCISGERWEWDGVSFVLWQWSGAISGNPKSCVLQVQAKGERLLLTGDIDSAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPRSVLISRGRGNAFGHPHSQVIERYQAQGSRLYDSAEHGAVRVQL
GAFQPAIVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=205356 BOP93_RS15880 WP_104503393.1 3552695..3554920(-) (comA) [Pseudomonas orientalis strain F9]
ATGAGGACAGGGATGTTCGCGCTCGCGCTGGGGTTACTGACCCTGCGCTTTCTTCCGGCGTTGCCGCCCACCGGATGGCT
GTTGGCCATGCTGGTGTTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCTTGCATCAGCGCGCAGTGGGCACTGGATGACCGATTGCGCCCGGCGCTGGACGGCGAGACGCGTTGGGTGGAGGGG
CGTGTGGTCGGGTTGCCGCAACAGACGGACACCGGCGTGCGCTTTGAACTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
GCCCAAGCGCATCCGGGTGTCATGGCACGGCGGGCCGCCGGTGCGCAGTGGGGAACGCTGGCGCTTGGCTGTCACCCTCA
GGCGGCCGTCCGGCCTGCTCAATTTTCATGGCGTCGACCACGAGGCATGGCTGCTGGCGCAACGCATTGGGGCCACGGGC
TCGGTGAAAGACGGCCAGCGCCTGGCGCCGGCCCGCAACGCCTTGCGCGACAGCCTGCGTCAACGCCTGATGGCCACCGA
TGCGCAAACCCATGAGGCCGCCCTGGCGGCGTTGGTGCTGGGTGACGGCTCCGGGCTGCGAGCGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCATTTGTTAGTCATTTCCGGTCAACACATCGGCTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCCCGTTACGGATGCTGGCCGCGCCACCTGCCATGGCTGCCGTGGGCGTGCGGCCTGGCCTTTGCCGC
AGCGCTGGGTTACGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGGCTGGTATTGCTGT
GGCGGCTGCGCTTTCGGCATTTGGGCGCATGGTGGCCGTTGTTGCTGGCATTCAATGGCGTACTGCTGCTTGAGCCGCTG
GCCAGTCTGCAGCCGGGCTTCTGGTTGTCATTTGCGGCGGTTGCGGTCCTGATCCTGACGTTCGGTGGACGGCTGGGCCC
CTGGGGTCTCTGGCAGGCGTGGACGCGTCCCCAGTGGCTGATTGCTATCGGCCTGTTTCCAATCCTGCTGGTGCTGGGTT
TACCCATCAGCCTCACTGCGCCATTGGCCAATGTGTTCGCCGTACCCTGGATCAGTCTAGTGGTGTTGCCTTTGGCGCTG
CTCGGCACGGCGCTGCTGTGGGTGCCAGTGATCGGTGACGGCCTGCTTTGGTTGGCCGGCGGGGCGCTGGAAGGGTGGTT
CAAGGTGCTGGCCCTGCTGGCCGGGCAGTTGCCGGCCTGGACGCCGGCCCAGGTGCCGCTGGTGTATTGGCTGGTCAGCC
TGCTGGGTGCGCTGATGCTGCTACTGCCCAAGGGGGTGCCGTTTCGGTTGCTGGGCTGGCCCATGCTGTTGCTGGCGGTG
TTTCCTCCCAGGGAGTCGATACCCCACGGGCAGGTGAGGGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCGCTGATCCT
GCGCACCCGCAATCATGCGCTGCTTTACGATGCCGGTCCGCGTTCCGGGGCGGTCGATCTGGGCGCACGCGTGGTTTTGC
CGTCATTGAAAAAGCTCGGCATAGAGCGGCTGGACATGCTGCTGCTGAGCCATGCCGATGCCGATCACGCTGGTGGCGCG
GCAGCGATAGCCCGTGGTTTGCCCATCGCACGCGTGGTAGGCGGCGAAACCGAGGGGTTGCCGGCTTTTCTGGGGACCGG
GCCCTGTATCAGTGGCGAGCGGTGGGAGTGGGATGGTGTGTCCTTCGTGTTGTGGCAGTGGTCCGGCGCCATAAGTGGCA
ATCCAAAGTCCTGTGTGTTGCAGGTGCAGGCCAAGGGTGAACGGCTGTTGCTCACCGGCGATATCGACAGCGCAGCGGAG
CGCGCCTTGCTTGATACGCCGCTGGCAGTGCCAACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCCTTTGTACAGCGGCTTGCGCCCAGGTCGGTGCTGATTTCCCGGGGCCGGGGCAACGCCTTCGGTCATCCTCATT
CGCAAGTGATAGAGCGCTATCAGGCCCAGGGCAGCCGACTATACGACAGCGCCGAACACGGGGCCGTGCGGGTTCAGTTG
GGTGCCTTCCAGCCCGCCATTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTGCCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0RY93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.362

97.031

0.586
  comA Ralstonia pseudosolanacearum GMI1000

33.883

100

0.36

Multiple sequence alignment