Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BOP93_RS15875 Genome accession   NZ_CP018049
Coordinates   3551950..3552585 (-) Length   211 a.a.
NCBI ID   WP_104505301.1    Uniprot ID   A0AAE2U5F9
Organism   Pseudomonas orientalis strain F9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3546950..3557585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS15840 (BOP93_15335) - 3547322..3547993 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  BOP93_RS15845 (BOP93_15340) murB 3548064..3549083 (-) 1020 WP_104503389.1 UDP-N-acetylmuramate dehydrogenase -
  BOP93_RS15850 (BOP93_15345) - 3549080..3549544 (-) 465 WP_104503390.1 low molecular weight protein-tyrosine-phosphatase -
  BOP93_RS15855 (BOP93_15350) kdsB 3549544..3550308 (-) 765 WP_104503391.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BOP93_RS15860 (BOP93_15355) - 3550305..3550490 (-) 186 WP_003174668.1 Trm112 family protein -
  BOP93_RS15865 (BOP93_15360) lpxK 3550515..3551525 (-) 1011 WP_104503392.1 tetraacyldisaccharide 4'-kinase -
  BOP93_RS15870 (BOP93_15365) - 3551525..3551953 (-) 429 WP_065884989.1 biopolymer transporter ExbD -
  BOP93_RS15875 (BOP93_15370) exbB 3551950..3552585 (-) 636 WP_104505301.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BOP93_RS15880 (BOP93_15375) comA 3552695..3554920 (-) 2226 WP_104503393.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BOP93_RS15885 (BOP93_15380) - 3555056..3555571 (+) 516 WP_065894963.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22974.11 Da        Isoelectric Point: 6.8768

>NTDB_id=205355 BOP93_RS15875 WP_104505301.1 3551950..3552585(-) (exbB) [Pseudomonas orientalis strain F9]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=205355 BOP93_RS15875 WP_104505301.1 3551950..3552585(-) (exbB) [Pseudomonas orientalis strain F9]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAGCTGCGCGCCAATTCGCCGTTGGGTGAAATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAGGAAGCGGCCGCGCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGTATGAGCACCAACGCCGCCGTGCTGGCCGGAGGTATTTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTGGGTATTCCTTCGGTCTTCTTCCACCGTTTCCTACAGCGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTACAGGGCGACCGTGATGTGGACCTGGTCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment