Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BSU_03800 Genome accession   NC_000964
Coordinates   432372..433322 (+) Length   316 a.a.
NCBI ID   NP_388262.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427372..438322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_03770 (BSU03770) rapC 428831..429979 (+) 1149 NP_388259.1 response regulator aspartate phosphatase Regulator
  BSU_03780 (BSU03780) phrC 429963..430085 (+) 123 NP_388260.1 secreted regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF) Regulator
  BSU_03788 (BSU03788) yczM 430185..430274 (-) 90 YP_003097676.1 putative type I toxin -
  BSU_03789 (BSU03789) yczN 430356..430469 (-) 114 YP_003097677.1 putative spore and germination protein -
  BSU_03790 (BSU03790) thrD 430623..431987 (-) 1365 NP_388261.1 aspartate kinase III -
  BSU_03800 (BSU03800) ceuB 432372..433322 (+) 951 NP_388262.1 petrobactin iron-siderophore ABC transporter (permease) Machinery gene
  BSU_03810 (BSU03810) pbtO 433315..434262 (+) 948 NP_388263.1 petrobactin iron-siderophore ABC transporter (permease) -
  BSU_03820 (BSU03820) pbtP 434256..435014 (+) 759 NP_388264.1 petrobactin iron-siderophore ABC transporter (ATP-binding protein) -
  BSU_03830 (BSU03830) pbtQ 435036..435989 (+) 954 NP_388265.1 petrobactin iron-siderophore ABC transporter (binding lipoprotein) -
  BSU_03840 (BSU03840) ycnB 436036..437454 (-) 1419 NP_388266.1 putative efflux transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34899.33 Da        Isoelectric Point: 9.9364

>NTDB_id=20527 BSU_03800 NP_388262.1 432372..433322(+) (ceuB) [Bacillus subtilis subsp. subtilis str. 168]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTVLLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=20527 BSU_03800 NP_388262.1 432372..433322(+) (ceuB) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TTGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGTGCTGTTGGGAGCGGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522

Multiple sequence alignment