Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | A2U21_RS02380 | Genome accession | NZ_CP018034 |
| Coordinates | 459118..459459 (+) | Length | 113 a.a. |
| NCBI ID | WP_010786294.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis str. Nagasaki | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 454118..464459
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U21_RS02360 (A2U21_02250) | - | 455393..455980 (-) | 588 | WP_005714008.1 | FMN-dependent NADH-azoreductase | - |
| A2U21_RS02365 (A2U21_02255) | waaF | 456076..457128 (-) | 1053 | WP_005714010.1 | lipopolysaccharide heptosyltransferase II | - |
| A2U21_RS02370 (A2U21_02260) | - | 457137..457493 (-) | 357 | WP_021114784.1 | MliC family protein | - |
| A2U21_RS02375 (A2U21_02265) | - | 457595..458860 (-) | 1266 | WP_005714013.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| A2U21_RS02380 (A2U21_02270) | comEA/comE1 | 459118..459459 (+) | 342 | WP_010786294.1 | ComEA family DNA-binding protein | Machinery gene |
| A2U21_RS02385 (A2U21_02275) | - | 459559..460007 (-) | 449 | Protein_439 | IS5 family transposase | - |
| A2U21_RS02390 (A2U21_02280) | epmA | 460148..461128 (+) | 981 | WP_035498022.1 | elongation factor P--(R)-beta-lysine ligase | - |
| A2U21_RS02395 (A2U21_02285) | - | 461181..461459 (+) | 279 | WP_005714674.1 | DUF1778 domain-containing protein | - |
| A2U21_RS02400 (A2U21_02290) | - | 461460..461957 (+) | 498 | WP_021109941.1 | GNAT family N-acetyltransferase | - |
| A2U21_RS02405 (A2U21_02295) | - | 461971..462753 (+) | 783 | WP_010786292.1 | TatD family hydrolase | - |
| A2U21_RS02410 (A2U21_02300) | - | 462791..463318 (+) | 528 | WP_005714677.1 | DUF1523 family protein | - |
| A2U21_RS02415 (A2U21_02305) | lpxH | 463432..464160 (+) | 729 | WP_005712084.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12407.27 Da Isoelectric Point: 9.8972
>NTDB_id=205203 A2U21_RS02380 WP_010786294.1 459118..459459(+) (comEA/comE1) [Glaesserella parasuis str. Nagasaki]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
Nucleotide
Download Length: 342 bp
>NTDB_id=205203 A2U21_RS02380 WP_010786294.1 459118..459459(+) (comEA/comE1) [Glaesserella parasuis str. Nagasaki]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
98.23 |
100 |
0.982 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.13 |
100 |
0.602 |