Detailed information NTG0205166

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BM528_RS14095
• Genome accession: NZ_CP018031
• Coordinates: 3169987..3170895 (+)
• Length: 302 a.a.
• NCBI ID: WP_071980367.1
• Uniprot ID: A0AAC9NWC0
• Organism: Alteromonas sp. RW2A1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3164987..3175895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BM528_RS14070 (BM528_13855)	tnpA	3165610..3165993 (+)	384	WP_071980362.1	IS200/IS605 family transposase	-
BM528_RS14075 (BM528_13860)	-	3166278..3166796 (+)	519	WP_071980363.1	TIGR02281 family clan AA aspartic protease	-
BM528_RS14080 (BM528_13865)	nadC	3166830..3167684 (+)	855	WP_198033618.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BM528_RS14085 (BM528_13870)	-	3168117..3168545 (+)	429	WP_071980365.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BM528_RS14090 (BM528_13875)	pilC	3168616..3169824 (+)	1209	WP_071980366.1	type II secretion system F family protein	Machinery gene
BM528_RS14095 (BM528_13880)	pilD	3169987..3170895 (+)	909	WP_071980367.1	A24 family peptidase	Machinery gene
BM528_RS14100 (BM528_13885)	coaE	3170896..3171501 (+)	606	WP_071980368.1	dephospho-CoA kinase	-
BM528_RS14105 (BM528_13890)	zapD	3171900..3172652 (+)	753	WP_071980369.1	cell division protein ZapD	-
BM528_RS14110 (BM528_13895)	yacG	3172902..3173129 (+)	228	WP_071980370.1	DNA gyrase inhibitor YacG	-
BM528_RS14115 (BM528_13900)	-	3173151..3174047 (+)	897	WP_071980371.1	aspartoacylase	-
BM528_RS14120 (BM528_13905)	mutT	3174237..3174629 (-)	393	WP_071980372.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 302 a.a.
• Molecular weight: 33274.16 Da
• Isoelectric Point: 6.0841

>NTDB_id=205166 BM528_RS14095 WP_071980367.1 3169987..3170895(+) (pilD) [Alteromonas sp. RW2A1]
MDAMITLSQLHPEFFYLLVFLVSLMVGSFLNVVIYRLPIMMERSWQEEYDSYFADTSEGTYSTHGSNSDSKSSSAPFNLV
KPDSTCPKCGHTIRAWENIPVISYVLLKGKCASCKTGISPRYPLVELFTAFACTFTAFHFGPTPQALWAVLFTYILIALI
FIDLDKMLLPDQLTLPLLWLGLLLSTNSIFVSTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAYTGW
QGLPVIILLSSFVGAVVGIAIMLAQNKGKSLAIPFGPYLAVAGWLTLLYKDTIISTYLELVL

Nucleotide

• Length: 909 bp

>NTDB_id=205166 BM528_RS14095 WP_071980367.1 3169987..3170895(+) (pilD) [Alteromonas sp. RW2A1]
ATGGATGCAATGATCACCCTTAGCCAACTTCACCCAGAGTTCTTCTATCTACTCGTGTTTTTAGTCAGCTTAATGGTTGG
CAGCTTTTTGAATGTGGTTATTTATCGCCTACCCATTATGATGGAGCGTAGCTGGCAAGAGGAATACGATAGTTATTTTG
CGGACACTAGTGAAGGGACTTATTCTACACATGGTTCTAATAGTGACTCCAAGAGCAGTTCAGCCCCTTTCAACCTCGTT
AAACCAGACAGCACCTGCCCCAAATGTGGCCACACTATTCGCGCTTGGGAAAATATTCCGGTAATAAGCTATGTGCTATT
AAAAGGTAAATGCGCCAGTTGTAAAACAGGTATATCTCCTCGATATCCACTGGTAGAACTGTTTACGGCCTTTGCATGTA
CCTTTACCGCTTTTCATTTTGGACCTACCCCTCAAGCGCTTTGGGCAGTTTTATTTACCTATATACTTATAGCGCTTATT
TTTATCGACCTTGATAAAATGTTGCTGCCCGACCAACTCACCCTGCCCCTGCTATGGCTTGGCTTACTGCTAAGTACTAA
TAGCATTTTTGTGAGCACCACCGACGCTATTATAGGCGCTGCTGCTGGGTATCTTAGTTTATGGTCGGTGTATTGGCTGT
TTAAGCTTGTTACTGGCAAAGAAGGAATGGGCTATGGCGATTTTAAATTACTTGCAGCGCTTGGTGCCTACACGGGCTGG
CAAGGTTTGCCAGTAATAATACTATTGTCATCTTTCGTTGGTGCGGTGGTAGGTATCGCCATAATGTTGGCGCAAAATAA
AGGCAAGTCACTGGCTATCCCCTTTGGCCCTTATTTGGCAGTGGCAGGTTGGCTTACCCTTTTGTACAAAGATACTATTA
TTTCTACCTATCTCGAGCTTGTATTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (151-259)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.542	97.682	0.513
pilD	Vibrio cholerae strain A1552	53.472	95.364	0.51
pilD	Acinetobacter baumannii D1279779	49.296	94.04	0.464
pilD	Neisseria gonorrhoeae MS11	48.276	96.026	0.464
pilD	Acinetobacter nosocomialis M2	48.944	94.04	0.46