Detailed information NTG0205148

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BM526_RS13695
• Genome accession: NZ_CP018029
• Coordinates: 3163281..3164174 (+)
• Length: 297 a.a.
• NCBI ID: WP_071969411.1
• Uniprot ID: -
• Organism: Alteromonas mediterranea strain RG65
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3158281..3169174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BM526_RS13670 (BM526_13615)	ampD	3158812..3159348 (-)	537	WP_071969403.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
BM526_RS13675 (BM526_13620)	-	3159524..3160042 (+)	519	WP_012519426.1	TIGR02281 family clan AA aspartic protease	-
BM526_RS13680 (BM526_13625)	nadC	3160062..3160916 (+)	855	WP_015067810.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BM526_RS13685 (BM526_13630)	-	3161452..3161871 (+)	420	WP_071969405.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BM526_RS13690 (BM526_13635)	pilC	3161943..3163151 (+)	1209	WP_071969409.1	type II secretion system F family protein	Machinery gene
BM526_RS13695 (BM526_13640)	pilD	3163281..3164174 (+)	894	WP_071969411.1	A24 family peptidase	Machinery gene
BM526_RS13700 (BM526_13645)	coaE	3164196..3164810 (+)	615	WP_071969413.1	dephospho-CoA kinase	-
BM526_RS13705 (BM526_13650)	zapD	3165024..3165776 (+)	753	WP_015067815.1	cell division protein ZapD	-
BM526_RS13710 (BM526_13655)	yacG	3165867..3166094 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
BM526_RS13715 (BM526_13660)	-	3166287..3167159 (+)	873	WP_071969415.1	aspartoacylase	-
BM526_RS13720 (BM526_13665)	mutT	3167250..3167633 (-)	384	WP_020746438.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32767.78 Da
• Isoelectric Point: 5.2127

>NTDB_id=205148 BM526_RS13695 WP_071969411.1 3163281..3164174(+) (pilD) [Alteromonas mediterranea strain RG65]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFTDGDTSLDTPNAPSQDDAFNLVKPDST
CPRCGHKIRAWENIPVISYLFLRGKCAKCKVGISVRYPMVELFTAIACTFAAYQFGATPQALWAVVFTYVLVALLFIDLD
TMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGAIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKAEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=205148 BM526_RS13695 WP_071969411.1 3163281..3164174(+) (pilD) [Alteromonas mediterranea strain RG65]
ATGGACGCTATAATAACCCTTAGCCAACTATACCCCGCTATTTTCTATACCCTTATCTTCTTAGTGAGCTTAATGGTTGG
CAGCTTTTTAAATGTAGTGATCTACCGCTTACCCATTATGATGGAGCGCAGCTGGCAGCAGGAATACCAAAGCTATTTTA
CCGACGGTGATACCAGTTTAGACACGCCTAACGCTCCTTCGCAAGACGATGCCTTTAACCTGGTAAAACCAGACAGTACT
TGCCCGCGCTGCGGCCACAAAATTCGCGCATGGGAGAACATTCCAGTAATTAGCTACCTATTTCTAAGGGGCAAATGTGC
CAAGTGCAAGGTAGGTATTTCAGTACGCTATCCAATGGTTGAGCTTTTCACTGCCATCGCCTGCACCTTCGCAGCCTATC
AGTTTGGCGCTACACCTCAAGCGCTTTGGGCCGTGGTTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGACTTAGAT
ACAATGTTGTTGCCCGACCAGCTCACGCTCCCTTTGCTTTGGCTTGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTGG
TACGACCGATGCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGCTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGCTATGGCGATTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAAGGGCTCCCCGTT
ATCATCTTGCTTTCATCACTGGTGGGCGCCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAGCTGAAATTATCACTACTTACCTTG
ATTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.448	97.643	0.522
pilD	Vibrio cholerae strain A1552	53.287	97.306	0.519
pilD	Acinetobacter baumannii D1279779	52.5	94.276	0.495
pilD	Acinetobacter nosocomialis M2	52.143	94.276	0.492
pilD	Neisseria gonorrhoeae MS11	49.615	87.542	0.434