Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Aba7847_RS04020 Genome accession   NZ_CP023031
Coordinates   849959..850624 (+) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 7847     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 844959..855624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba7847_RS04005 (Aba7847_04005) omp33-36 846291..847190 (-) 900 WP_000733005.1 porin Omp33-36 -
  Aba7847_RS04015 (Aba7847_04015) - 849098..849520 (-) 423 WP_001195082.1 OsmC family protein -
  Aba7847_RS19990 (Aba7847_04020) - 849599..849718 (-) 120 Protein_769 hypothetical protein -
  Aba7847_RS04020 (Aba7847_04025) crp 849959..850624 (+) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  Aba7847_RS04025 (Aba7847_04030) - 850681..851771 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  Aba7847_RS04030 (Aba7847_04035) - 852132..853838 (+) 1707 WP_000016117.1 GGDEF domain-containing protein -
  Aba7847_RS04035 (Aba7847_04040) - 853921..855576 (+) 1656 WP_000865808.1 P-loop NTPase fold protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=205040 Aba7847_RS04020 WP_000203219.1 849959..850624(+) (crp) [Acinetobacter baumannii strain 7847]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=205040 Aba7847_RS04020 WP_000203219.1 849959..850624(+) (crp) [Acinetobacter baumannii strain 7847]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425