Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CJZ69_RS01920 Genome accession   NZ_CP022959
Coordinates   408177..408809 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli ATCC 8739     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 403177..413809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ69_RS01895 (CJZ69_01965) yhfG 403309..403476 (+) 168 WP_000736860.1 YhfG family protein -
  CJZ69_RS01900 (CJZ69_01970) fic 403466..404068 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CJZ69_RS01905 (CJZ69_01975) pabA 404100..404663 (+) 564 WP_000601851.1 aminodeoxychorismate synthase component 2 -
  CJZ69_RS01910 (CJZ69_01980) argD 404749..405969 (+) 1221 WP_000963787.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CJZ69_RS01915 (CJZ69_01985) yhfK 406036..408126 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CJZ69_RS01920 (CJZ69_01990) crp 408177..408809 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CJZ69_RS01930 (CJZ69_02000) yhfA 409111..409515 (+) 405 WP_001148908.1 OsmC family protein -
  CJZ69_RS01935 (CJZ69_02005) prkB 409570..410439 (-) 870 WP_001274680.1 phosphoribulokinase -
  CJZ69_RS01940 (CJZ69_02010) yheU 410493..410711 (-) 219 WP_000907085.1 YheU family protein -
  CJZ69_RS01945 (CJZ69_02015) yheT 410705..411727 (-) 1023 WP_000057378.1 hydrolase -
  CJZ69_RS01950 (CJZ69_02020) yheS 411727..413640 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=204653 CJZ69_RS01920 WP_000242755.1 408177..408809(-) (crp) [Escherichia coli ATCC 8739]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=204653 CJZ69_RS01920 WP_000242755.1 408177..408809(-) (crp) [Escherichia coli ATCC 8739]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467