Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AW63_RS23380 Genome accession   NZ_CP017970
Coordinates   4568798..4570318 (+) Length   506 a.a.
NCBI ID   WP_000050207.1    Uniprot ID   A0A3U8JQ33
Organism   Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1900     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4563798..4575318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW63_RS23360 (AW63_23095) ilvE 4565356..4566285 (-) 930 WP_000208532.1 branched-chain-amino-acid transaminase -
  AW63_RS23365 (AW63_23100) ilvM 4566303..4566566 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  AW63_RS23370 (AW63_23105) ilvG 4566563..4568209 (-) 1647 WP_001012573.1 acetolactate synthase 2 catalytic subunit -
  AW63_RS23820 ilvX 4568212..4568262 (-) 51 WP_192930503.1 peptide IlvX -
  AW63_RS23375 (AW63_23110) ilvL 4568349..4568447 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AW63_RS23380 (AW63_23115) comM 4568798..4570318 (+) 1521 WP_000050207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AW63_RS23385 (AW63_23120) maoP 4570343..4570681 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  AW63_RS23390 (AW63_23125) hdfR 4570788..4571636 (+) 849 WP_001657826.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55019.21 Da        Isoelectric Point: 8.4867

>NTDB_id=204646 AW63_RS23380 WP_000050207.1 4568798..4570318(+) (comM) [Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1900]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIKAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGIFPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=204646 AW63_RS23380 WP_000050207.1 4568798..4570318(+) (comM) [Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1900]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGCGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAAGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGTTGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTTTTCCACCATTAAGCAATGAA
GAAGCATTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCAGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATCCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCGAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACATGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTATTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3U8JQ33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.614

99.802

0.585
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.429

Multiple sequence alignment