Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BMU11_RS05430 Genome accession   NZ_CP017938
Coordinates   1131575..1132987 (-) Length   470 a.a.
NCBI ID   WP_078220042.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126575..1137987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS05415 (BMU11_05250) lptG 1127627..1128697 (+) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -
  BMU11_RS05420 (BMU11_05255) gpmI 1128824..1130371 (+) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BMU11_RS05425 (BMU11_05260) ctpA 1130387..1131571 (+) 1185 WP_017400162.1 S41 family peptidase -
  BMU11_RS05430 (BMU11_05265) pilR 1131575..1132987 (-) 1413 WP_078220042.1 sigma-54-dependent transcriptional regulator Regulator
  BMU11_RS05435 (BMU11_05270) pilS 1133011..1134579 (-) 1569 WP_213033995.1 sensor histidine kinase Regulator
  BMU11_RS05440 (BMU11_05275) gacA 1134590..1135225 (-) 636 WP_002121174.1 response regulator -
  BMU11_RS05445 (BMU11_05280) pbpG 1135438..1136484 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BMU11_RS05450 (BMU11_05285) thrC 1136593..1137732 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52640.71 Da        Isoelectric Point: 6.4527

>NTDB_id=204269 BMU11_RS05430 WP_078220042.1 1131575..1132987(-) (pilR) [Acinetobacter pittii strain YMC2010/8/T346]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKTGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIKKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=204269 BMU11_RS05430 WP_078220042.1 1131575..1132987(-) (pilR) [Acinetobacter pittii strain YMC2010/8/T346]
ATGGCAGAACAGCAACCACTTGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAACTGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAGATTCATTTAGATCAGCTATTAAAAAAAGCGCTCAATCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCGAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGAGCGGCTCAAGACAAACAAGGTCTGATTTTATCGGCACATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTAAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCTAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTCCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGGGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCACCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGACTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTAC
GCTATCGATTAAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.201

100

0.857
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496

Multiple sequence alignment