Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BMU11_RS05435 Genome accession   NZ_CP017938
Coordinates   1133011..1134579 (-) Length   522 a.a.
NCBI ID   WP_213033995.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128011..1139579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS05420 (BMU11_05255) gpmI 1128824..1130371 (+) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BMU11_RS05425 (BMU11_05260) ctpA 1130387..1131571 (+) 1185 WP_017400162.1 S41 family peptidase -
  BMU11_RS05430 (BMU11_05265) pilR 1131575..1132987 (-) 1413 WP_078220042.1 sigma-54-dependent transcriptional regulator Regulator
  BMU11_RS05435 (BMU11_05270) pilS 1133011..1134579 (-) 1569 WP_213033995.1 sensor histidine kinase Regulator
  BMU11_RS05440 (BMU11_05275) gacA 1134590..1135225 (-) 636 WP_002121174.1 response regulator -
  BMU11_RS05445 (BMU11_05280) pbpG 1135438..1136484 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BMU11_RS05450 (BMU11_05285) thrC 1136593..1137732 (-) 1140 WP_002048893.1 threonine synthase -
  BMU11_RS05455 (BMU11_05290) hom 1137787..1139088 (-) 1302 WP_002121263.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59192.82 Da        Isoelectric Point: 6.4276

>NTDB_id=204270 BMU11_RS05435 WP_213033995.1 1133011..1134579(-) (pilS) [Acinetobacter pittii strain YMC2010/8/T346]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSVILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDVEQQNTLRNMIGKQTKRINSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLSDVK
HTIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=204270 BMU11_RS05435 WP_213033995.1 1133011..1134579(-) (pilS) [Acinetobacter pittii strain YMC2010/8/T346]
ATGCAATTTCCCTTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGTCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCAACTAGACAG
CTCATTTTATTTTTTATAGTTGATATTATCTGTCTGAGTTTACTGACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGTCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCCGTTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTTCAGCGCTTTAAATTACTTGAGGCACTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATATTGAAGTTTGATAATTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTACAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATTCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGACAGTGATGTGGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACAAAACGCATTAATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTACCCCATCCAGATTGAATTAAATGACTTCTTAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATACGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.444

100

0.944

Multiple sequence alignment