Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   BMU11_RS02410 Genome accession   NZ_CP017938
Coordinates   505453..505878 (-) Length   141 a.a.
NCBI ID   WP_014207809.1    Uniprot ID   A0AAN4MGD4
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500453..510878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02380 (BMU11_02300) - 500960..501991 (+) 1032 WP_063097788.1 lipase secretion chaperone -
  BMU11_RS02385 (BMU11_02305) lip 502107..503048 (+) 942 WP_078219778.1 lipase family alpha/beta hydrolase -
  BMU11_RS02390 (BMU11_02310) rplS 503100..503468 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  BMU11_RS02395 (BMU11_02315) trmD 503688..504443 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BMU11_RS02400 (BMU11_02320) rimM 504486..505034 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  BMU11_RS02405 (BMU11_02325) rpsP 505054..505305 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  BMU11_RS02410 (BMU11_02330) pilE 505453..505878 (-) 426 WP_014207809.1 type IV pilin protein Machinery gene
  BMU11_RS02415 (BMU11_02335) pilY2 505875..506357 (-) 483 WP_078219779.1 type IV pilin protein Machinery gene
  BMU11_RS02420 (BMU11_02340) pilY1 506368..510222 (-) 3855 WP_213033973.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15188.33 Da        Isoelectric Point: 7.1292

>NTDB_id=204252 BMU11_RS02410 WP_014207809.1 505453..505878(-) (pilE) [Acinetobacter pittii strain YMC2010/8/T346]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFSSITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=204252 BMU11_RS02410 WP_014207809.1 505453..505878(-) (pilE) [Acinetobacter pittii strain YMC2010/8/T346]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
GTATTTGCAGTATTTACGCAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACGATTACTTCGATTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTTCTAGCATAACTGATTCAAGCTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTCTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.816

100

0.858
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511

Multiple sequence alignment