Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BMU11_RS02045 Genome accession   NZ_CP017938
Coordinates   431910..432539 (+) Length   209 a.a.
NCBI ID   WP_078219742.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426910..437539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02030 (BMU11_01950) - 427973..428956 (-) 984 WP_025468463.1 putative solute-binding protein -
  BMU11_RS02035 (BMU11_01955) - 429036..429851 (-) 816 WP_078219741.1 NAD-dependent epimerase/dehydratase family protein -
  BMU11_RS02040 (BMU11_01960) recG 429872..431917 (+) 2046 WP_068530081.1 ATP-dependent DNA helicase RecG -
  BMU11_RS02045 (BMU11_01965) comF 431910..432539 (+) 630 WP_078219742.1 ComF family protein Machinery gene
  BMU11_RS02050 (BMU11_01970) mutT 432541..432942 (-) 402 WP_017386994.1 NUDIX hydrolase -
  BMU11_RS02055 (BMU11_01975) - 432957..433538 (-) 582 WP_078219743.1 TIGR00730 family Rossman fold protein -
  BMU11_RS02060 (BMU11_01980) - 433697..434710 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  BMU11_RS02065 (BMU11_01985) - 434783..435070 (-) 288 WP_002116926.1 STAS domain-containing protein -
  BMU11_RS02070 (BMU11_01990) - 435082..435723 (-) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BMU11_RS02075 (BMU11_01995) - 435750..436430 (-) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BMU11_RS02080 (BMU11_02000) mlaE 436430..437206 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24562.66 Da        Isoelectric Point: 9.6546

>NTDB_id=204251 BMU11_RS02045 WP_078219742.1 431910..432539(+) (comF) [Acinetobacter pittii strain YMC2010/8/T346]
MFNFLNFEHLIQLFSPCSLCELETREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=204251 BMU11_RS02045 WP_078219742.1 431910..432539(+) (comF) [Acinetobacter pittii strain YMC2010/8/T346]
ATGTTTAATTTTTTAAATTTCGAGCATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGAAACGCGAGAAAA
ATACTCACTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACACCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823

Multiple sequence alignment