Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BMU11_RS01705 Genome accession   NZ_CP017938
Coordinates   375721..376605 (-) Length   294 a.a.
NCBI ID   WP_078219732.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370721..381605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS01690 (BMU11_01615) miaB 372606..374057 (+) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BMU11_RS01695 (BMU11_01620) phoL 374095..375183 (+) 1089 WP_002119513.1 PhoH family protein -
  BMU11_RS01700 (BMU11_01625) ybeY 375193..375669 (+) 477 WP_002119528.1 rRNA maturation RNase YbeY -
  BMU11_RS01705 (BMU11_01630) tonB2 375721..376605 (-) 885 WP_078219732.1 energy transducer TonB Machinery gene
  BMU11_RS01710 (BMU11_01635) - 376838..377509 (+) 672 WP_014207723.1 hypothetical protein -
  BMU11_RS01715 (BMU11_01640) - 377668..378381 (+) 714 WP_002119525.1 DUF3108 domain-containing protein -
  BMU11_RS01720 (BMU11_01645) xpt 378454..379029 (+) 576 WP_078219733.1 xanthine phosphoribosyltransferase -
  BMU11_RS01725 (BMU11_01650) wrbA 379081..379683 (-) 603 WP_204085516.1 NAD(P)H:quinone oxidoreductase -
  BMU11_RS01730 (BMU11_01655) - 380045..381292 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33625.22 Da        Isoelectric Point: 7.6436

>NTDB_id=204249 BMU11_RS01705 WP_078219732.1 375721..376605(-) (tonB2) [Acinetobacter pittii strain YMC2010/8/T346]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKLEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQKDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=204249 BMU11_RS01705 WP_078219732.1 375721..376605(-) (tonB2) [Acinetobacter pittii strain YMC2010/8/T346]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGGGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAACCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAACAAAGAGAGCTTAAACTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAAAAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTCTATGGCAACCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCGAAGTCTTCAGTACGTCGCGGTGCACCATTCGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878

Multiple sequence alignment