Detailed information NTG0204120

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K09K1_RS19920
• Genome accession: NZ_CP017919
• Coordinates: 2328258..2329127 (-)
• Length: 289 a.a.
• NCBI ID: WP_086047031.1
• Uniprot ID: A0A1W6TUE5
• Organism: Vibrio alginolyticus strain K09K1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2323258..2334127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K09K1_RS19885 (K09K1_39330)	rpsP	2323857..2324105 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
K09K1_RS19890 (K09K1_39340)	rimM	2324135..2324683 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
K09K1_RS19895 (K09K1_39350)	trmD	2324711..2325472 (+)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K09K1_RS19900 (K09K1_39360)	rplS	2325514..2325867 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
K09K1_RS19905 (K09K1_39370)	yacG	2326522..2326716 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
K09K1_RS19910 (K09K1_39380)	zapD	2326875..2327615 (-)	741	WP_005373086.1	cell division protein ZapD	-
K09K1_RS19915 (K09K1_39390)	coaE	2327643..2328257 (-)	615	WP_017635920.1	dephospho-CoA kinase	-
K09K1_RS19920 (K09K1_39400)	pilD	2328258..2329127 (-)	870	WP_086047031.1	prepilin peptidase	Machinery gene
K09K1_RS19925 (K09K1_39410)	pilC	2329192..2330415 (-)	1224	WP_054730505.1	type II secretion system F family protein	Machinery gene
K09K1_RS19930 (K09K1_39420)	pilB	2330439..2332124 (-)	1686	WP_054730502.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K09K1_RS19935 (K09K1_39430)	pilA	2332128..2332592 (-)	465	WP_033905592.1	pilin	Machinery gene
K09K1_RS19940 (K09K1_39440)	nadC	2332855..2333742 (-)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32547.76 Da
• Isoelectric Point: 6.8455

>NTDB_id=204120 K09K1_RS19920 WP_086047031.1 2328258..2329127(-) (pilD) [Vibrio alginolyticus strain K09K1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVALQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=204120 K09K1_RS19920 WP_086047031.1 2328258..2329127(-) (pilD) [Vibrio alginolyticus strain K09K1]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATAGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTGCTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A1W6TUE5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.852	93.426	0.484
pilD	Acinetobacter nosocomialis M2	51.481	93.426	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453