Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K09K1_RS19935 Genome accession   NZ_CP017919
Coordinates   2332128..2332592 (-) Length   154 a.a.
NCBI ID   WP_033905592.1    Uniprot ID   A0AAW9B0I7
Organism   Vibrio alginolyticus strain K09K1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2327128..2337592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K09K1_RS19915 (K09K1_39390) coaE 2327643..2328257 (-) 615 WP_017635920.1 dephospho-CoA kinase -
  K09K1_RS19920 (K09K1_39400) pilD 2328258..2329127 (-) 870 WP_086047031.1 prepilin peptidase Machinery gene
  K09K1_RS19925 (K09K1_39410) pilC 2329192..2330415 (-) 1224 WP_054730505.1 type II secretion system F family protein Machinery gene
  K09K1_RS19930 (K09K1_39420) pilB 2330439..2332124 (-) 1686 WP_054730502.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K09K1_RS19935 (K09K1_39430) pilA 2332128..2332592 (-) 465 WP_033905592.1 pilin Machinery gene
  K09K1_RS19940 (K09K1_39440) nadC 2332855..2333742 (-) 888 WP_005379983.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K09K1_RS19945 (K09K1_39450) ampD 2333835..2334387 (+) 553 Protein_2054 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  K09K1_RS19950 (K09K1_39470) pdhR 2334793..2335560 (+) 768 WP_005379989.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16098.26 Da        Isoelectric Point: 7.6284

>NTDB_id=204123 K09K1_RS19935 WP_033905592.1 2332128..2332592(-) (pilA) [Vibrio alginolyticus strain K09K1]
MKNSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKAASAMKLAVELCAHENASNAATFKTNCLSGS
NGVPSKINNLNDISIEAVAGSSGVNVIAKAVAVKGPIASGEQYTMASNYTTSGIEWAGSCQDSNGNNQSDYCPE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=204123 K09K1_RS19935 WP_033905592.1 2332128..2332592(-) (pilA) [Vibrio alginolyticus strain K09K1]
ATGAAAAACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTAATGATTGTCGTCGCGATTATTGGTATTTT
GGCCGCATTTGCTGTGCCTGCTTATCAAAACTACACAAAAAAAGCGACGCTGGCAGAGTTCCCAAAAGCAGCTTCTGCGA
TGAAGTTAGCCGTTGAGTTGTGTGCACATGAAAATGCATCAAACGCAGCTACTTTTAAAACGAACTGCTTATCTGGTAGT
AATGGTGTACCTTCAAAAATTAACAACCTAAATGATATCTCTATTGAAGCAGTTGCTGGATCATCAGGCGTAAATGTCAT
TGCAAAAGCTGTAGCAGTAAAAGGGCCGATTGCTAGTGGAGAACAGTATACTATGGCATCTAACTACACGACTAGTGGTA
TTGAGTGGGCGGGCTCATGTCAAGATTCTAATGGTAATAACCAATCTGATTACTGTCCTGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio campbellii strain DS40M4

55.484

100

0.558

Multiple sequence alignment