Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   K08M4_RS01350 Genome accession   NZ_CP017916
Coordinates   294255..294887 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio syngnathi strain K08M4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 289255..299887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS01335 (K08M4_02590) astA 290512..291531 (+) 1020 WP_086048629.1 arginine N-succinyltransferase -
  K08M4_RS01340 (K08M4_02600) astD 291571..293028 (+) 1458 WP_012604932.1 succinylglutamate-semialdehyde dehydrogenase -
  K08M4_RS01345 (K08M4_02610) - 293286..294077 (+) 792 WP_086048630.1 DUF1338 domain-containing protein -
  K08M4_RS01350 (K08M4_02620) crp 294255..294887 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  K08M4_RS01355 (K08M4_02630) - 295129..295998 (-) 870 WP_004729650.1 phosphoribulokinase -
  K08M4_RS01360 (K08M4_02640) - 296076..296288 (-) 213 WP_086048631.1 YheU family protein -
  K08M4_RS01365 (K08M4_02650) - 296403..297410 (-) 1008 WP_086048632.1 hydrolase -
  K08M4_RS01370 (K08M4_02660) - 297681..298151 (-) 471 WP_086048633.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=204043 K08M4_RS01350 WP_004729651.1 294255..294887(-) (crp) [Vibrio syngnathi strain K08M4]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=204043 K08M4_RS01350 WP_004729651.1 294255..294887(-) (crp) [Vibrio syngnathi strain K08M4]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment