Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SMA_1819 Genome accession   HE613569
Coordinates   1766584..1767084 (-) Length   166 a.a.
NCBI ID   CCF03110.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1761584..1772084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1813 corA 1763047..1763991 (+) 945 CCF03104.1 Magnesium and cobalt transport protein CorA -
  SMA_1814 - 1764301..1764957 (+) 657 CCF03105.1 Integral membrane protein -
  SMA_1815 - 1765003..1765453 (-) 451 Protein_1814 Hypothetical protein -
  SMA_1816 - 1765455..1765664 (-) 210 CCF03107.1 Predicted transcriptional regulator -
  SMA_1817 - 1765667..1766191 (-) 525 Protein_1816 Hypothetical protein -
  SMA_1818 rpsR 1766284..1766523 (-) 240 CCF03109.1 SSU ribosomal protein S18p -
  SMA_1819 ssb 1766584..1767084 (-) 501 CCF03110.1 Single-stranded DNA-binding protein 1 Machinery gene
  SMA_1820 rpsF 1767096..1767386 (-) 291 CCF03111.1 SSU ribosomal protein S6p -
  SMA_1821 - 1767611..1767775 (-) 165 CCF03112.1 Hypothetical protein -
  SMA_1822 - 1768202..1768462 (+) 261 CCF03113.1 Transposase -
  SMA_1823 - 1768459..1769312 (+) 854 Protein_1822 Transposase -
  SMA_1824 - 1769568..1770569 (-) 1002 CCF03115.1 Glycosyltransferase -
  SMA_1825 - 1770897..1771577 (+) 681 CCF03116.1 Transposase -
  SMA_1826 - 1771633..1771758 (+) 126 Protein_1825 Hypothetical protein -
  SMA_1827 - 1771850..1772016 (-) 167 Protein_1826 Hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18383.98 Da        Isoelectric Point: 4.7187

>NTDB_id=20367 SMA_1819 CCF03110.1 1766584..1767084(-) (ssb) [Streptococcus macedonicus ACA-DC 198]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADDFQILESRATREGQSGGFNNNNSSFGGSSNGGGFSSQSSQSQTPNFGRDESPFGNSNPMDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=20367 SMA_1819 CCF03110.1 1766584..1767084(-) (ssb) [Streptococcus macedonicus ACA-DC 198]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGTGATGCAGAACTCCGTTACACACCATCTAATCAAGCCGTTGC
CACATTTACACTTGCTGTAAACCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTATGTAACAGAGATTGTTGCAGATGATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACGGTGGTGGATTCTCAT
CGCAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAATCCAATGGACATTTCA
GATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.614
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

65.663

0.361

Multiple sequence alignment