Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   SMA_1588 Genome accession   HE613569
Coordinates   1557350..1558351 (-) Length   333 a.a.
NCBI ID   CCF02879.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1552350..1563351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1585 thrS 1552625..1554571 (-) 1947 CCF02876.1 Threonyl-tRNA synthetase -
  SMA_1586 - 1554920..1556254 (-) 1335 CCF02877.1 Glycosyltransferase LafA, responsible for the formation of Glc-DAG -
  SMA_1587 - 1556256..1557254 (-) 999 CCF02878.1 Glycosyltransferase LafB, responsible for the formation of Gal-Glc-DAG -
  SMA_1588 ccpA 1557350..1558351 (-) 1002 CCF02879.1 Catabolite control protein A Regulator
  SMA_1589 pepQ 1558680..1559765 (+) 1086 CCF02880.1 Proline dipeptidase -
  SMA_1590 - 1559799..1560125 (-) 327 CCF02881.1 Small multidrug resistance protein -
  SMA_1591 - 1560339..1560464 (+) 126 Protein_1590 Transcriptional regulator, MarR family -
  SMA_1592 - 1560673..1560801 (+) 129 CCF02883.1 Hypothetical protein -
  SMA_1593 - 1560835..1561098 (+) 264 CCF02884.1 Hypothetical protein -
  SMA_1594 yfkO 1561224..1561901 (+) 678 CCF02885.1 Oxygen-insensitive NAD(P)H nitroreductase/Dihydropteridine reductase -
  SMA_1595 bglH 1562048..1562506 (-) 459 CCF02886.1 6-phospho-beta-glucosidase -
  SMA_1596 bglA 1562464..1562886 (-) 423 CCF02887.1 6-phospho-beta-glucosidase -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36532.53 Da        Isoelectric Point: 5.0350

>NTDB_id=20362 SMA_1588 CCF02879.1 1557350..1558351(-) (ccpA) [Streptococcus macedonicus ACA-DC 198]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHRLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVADVVDILAKNNKEIAFVSGPLIDDINGKVRLAGYKEGLEKNGLSFKEGLVFEANYNYKDGFELAQRVINSG
STAAFVAEDELAAGLLNGLFEAGKKVPEDFEIITSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGLTTRGTTR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=20362 SMA_1588 CCF02879.1 1557350..1558351(-) (ccpA) [Streptococcus macedonicus ACA-DC 198]
ATGAACACTGATGATACGATTACAATTTATGACGTTGCCCGAGAAGCAGGCGTCTCTATGGCAACAGTTAGTCGTGTTGT
AAATGGCAATAAAAACGTAAAGGAAAACACACGTAAAAAAGTCCTTGAAGTTATTGACCGTTTGGATTATCGTCCAAATG
CCGTTGCCCGCGGTTTAGCAAGTAAAAAGACAACAACAGTAGGTGTTGTTATCCCTAATATTGCTAACAGCTATTTCTCA
ATTCTTGCTAAAGGGATTGATGATATTGCCGCTATGTACAAGTACAATATCGTACTTGCTTCAAGTGATGAAGATGATGA
TAAGGAAGTTAACGTTGTTAACACCTTGTTTGCTAAACAAGTTGATGGTATTATCTTCATGGGACATCGTTTGACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTTGTACTTGCGGGTACAGTTGACTTAGAACACCAACTCCCAAGT
GTTAATATTGACTACAAAGCAGCCGTTGCTGATGTTGTTGATATTTTGGCTAAAAATAATAAAGAAATCGCCTTTGTTTC
TGGTCCACTTATCGATGATATCAACGGTAAAGTGCGTTTAGCTGGTTACAAAGAAGGTCTTGAAAAAAATGGCTTATCGT
TCAAAGAAGGCCTTGTCTTTGAAGCTAATTACAACTATAAGGACGGATTTGAACTTGCACAACGTGTGATTAATTCTGGC
TCAACAGCAGCCTTTGTTGCCGAAGACGAATTGGCAGCAGGATTGTTGAATGGCTTGTTCGAAGCTGGCAAAAAAGTTCC
AGAAGACTTTGAAATCATCACAAGCAATGATTCACCAATCACATCATACACACGTCCAAACCTTAGCTCAATCAGCCAAC
CAGTTTATGACCTTGGTGCTGTCAGCATGCGTATGTTGACTAAAATCATGAACAAAGAGGAACTCGAAGAAAAAGAAATT
CTTCTTAATCACGGTCTTACAACACGTGGCACAACACGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.88

100

0.799

  ccpA Streptococcus pneumoniae D39

77.778

100

0.778

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment