Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SMA_1568 Genome accession   HE613569
Coordinates   1538110..1538919 (-) Length   269 a.a.
NCBI ID   CCF02859.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533110..1543919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1565 smc 1533253..1536792 (-) 3540 CCF02856.1 Chromosome partition protein Smc -
  SMA_1566 rnc 1536923..1537609 (-) 687 CCF02857.1 Ribonuclease III -
  SMA_1567 - 1537893..1538021 (-) 129 CCF02858.1 Hypothetical protein -
  SMA_1568 vicX 1538110..1538919 (-) 810 CCF02859.1 Zn-dependent hydrolase (beta-lactamase superfamily) Regulator
  SMA_1569 vicK 1538920..1540272 (-) 1353 CCF02860.1 Two-component sensor kinase SA14-24 Regulator
  SMA_1570 vicR 1540265..1540975 (-) 711 CCF02861.1 Two-component response regulator SA14-24 Regulator
  SMA_1571 - 1541280..1542044 (+) 765 CCF02862.1 Glutamate transport ATP-binding protein -
  SMA_1572 - 1542055..1542867 (+) 813 CCF02863.1 Amino acid ABCtransporter substrate-binding protein -
  SMA_1573 - 1542884..1543588 (+) 705 CCF02864.1 Amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30307.25 Da        Isoelectric Point: 5.5765

>NTDB_id=20359 SMA_1568 CCF02859.1 1538110..1538919(-) (vicX) [Streptococcus macedonicus ACA-DC 198]
MSEIAFKYSILASGSTGNSFYVETPQKRFLIDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDERNMIGKLDLAQKHIFERGKTLTHGDIDIESFGVSHDAVEPQFYRLMKDNKSFVVLTDTGYVSDRMAG
IIENADGYLIESNHDVEILRSGSYPWSLKQRVLSDKGHLSNEDGAGTMIRTIGNHTKKIYLGHLSKENNIKELARMTMEN
NLIQADFGVGYDMKVFDTSPDEATPLTEL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=20359 SMA_1568 CCF02859.1 1538110..1538919(-) (vicX) [Streptococcus macedonicus ACA-DC 198]
ATGTCTGAAATTGCTTTTAAATATAGTATTTTAGCCTCCGGTTCAACTGGAAATTCTTTTTATGTGGAAACACCACAAAA
ACGTTTTTTGATTGATGCGGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCAGAAGACT
TAGATGCTATTTTTATTACACACGAACATTCTGATCATATCAAAGGGGTTGGGGTGTTAGCACGTCGTTATAATCTTGAT
GTTTATGCGAATGAAAAAACGTGGCAAATGATTGATGAGCGAAATATGATCGGAAAGCTCGATTTAGCTCAAAAACATAT
TTTTGAACGTGGGAAAACATTGACACATGGTGACATTGATATTGAAAGTTTTGGTGTTAGCCACGATGCCGTTGAGCCAC
AATTTTATCGTTTGATGAAAGATAATAAATCATTTGTTGTCTTAACAGATACAGGTTATGTTAGTGACCGCATGGCAGGA
ATTATTGAAAATGCTGACGGTTATTTGATTGAATCGAATCATGACGTTGAGATTTTACGTTCAGGCTCTTATCCGTGGAG
TTTGAAACAACGTGTCCTATCTGATAAAGGACACTTGTCAAACGAAGATGGTGCTGGGACAATGATTCGAACCATTGGAA
ATCACACGAAGAAAATTTACCTTGGACATTTGAGTAAAGAAAACAATATCAAAGAATTGGCTCGCATGACCATGGAAAAT
AATCTTATTCAAGCTGACTTTGGGGTTGGTTATGACATGAAAGTCTTTGATACCTCACCAGACGAAGCAACACCATTAAC
AGAGTTATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment