Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SPG_1060 Genome accession   CP001015
Coordinates   1035466..1036536 (+) Length   356 a.a.
NCBI ID   ACF56147.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030466..1041536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1056 - 1031470..1031631 (-) 162 ACF56352.1 hypothetical protein -
  SPG_1057 - 1031699..1032550 (+) 852 ACF56722.1 GTP-binding protein -
  SPG_1058 - 1032537..1033316 (+) 780 ACF55053.1 ribonuclease HII -
  SPG_1059 - 1033332..1034882 (+) 1551 ACF56762.1 voltage-gated chloride channel family protein -
  SPG_1060 xerS 1035466..1036536 (+) 1071 ACF56147.1 tyrosine recombinase XerC Machinery gene
  SPG_1061 lplA 1036603..1037592 (-) 990 ACF55541.1 lipoate protein ligase A -
  SPG_1062 lpdA 1037656..1039359 (-) 1704 ACF56733.1 dihydrolipoyl dehydrogenase -
  SPG_1063 - 1039405..1040448 (-) 1044 ACF55169.1 Pyruvate dehydrogenase complex E2 component, dihydrolipoamide acyltransferase, putative -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41176.94 Da        Isoelectric Point: 9.6220

>NTDB_id=20360 SPG_1060 ACF56147.1 1035466..1036536(+) (xerS) [Streptococcus pneumoniae G54]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYXRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=20360 SPG_1060 ACF56147.1 1035466..1036536(+) (xerS) [Streptococcus pneumoniae G54]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATNTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997

Multiple sequence alignment