Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SMA_1223 Genome accession   HE613569
Coordinates   1189383..1189823 (-) Length   146 a.a.
NCBI ID   CCF02514.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184383..1194823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1220 - 1184555..1185489 (-) 935 Protein_1219 putative oxidoreductase -
  SMA_1221 rcrQ 1185803..1187575 (-) 1773 CCF02512.1 Multidrug ABC exporter (DrugE2) family, ATP binding/membrane-spanning protein Regulator
  SMA_1222 rcrP 1187565..1189379 (-) 1815 CCF02513.1 Lipid A export ATP-binding/permease protein MsbA Regulator
  SMA_1223 rcrR 1189383..1189823 (-) 441 CCF02514.1 Transcriptional regulator, MarR family Regulator
  SMA_1224 def 1189999..1190409 (-) 411 CCF02515.1 Peptide deformylase -
  SMA_1225 rimI 1190484..1190915 (-) 432 CCF02516.1 Acetyltransferase, GNAT family -
  SMA_1226 gdh 1191193..1192545 (-) 1353 CCF02517.1 NADP-specific glutamate dehydrogenase -
  SMA_1227 - 1192976..1193473 (+) 498 CCF02518.1 Membrane protein, putative -
  SMA_1228 queF 1193529..1194020 (-) 492 CCF02519.1 NADPH dependent preQ0 reductase -
  SMA_1229 queE 1194033..1194746 (-) 714 CCF02520.1 Queuosine Biosynthesis QueE Radical SAM -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17144.66 Da        Isoelectric Point: 9.8372

>NTDB_id=20357 SMA_1223 CCF02514.1 1189383..1189823(-) (rcrR) [Streptococcus macedonicus ACA-DC 198]
MHKKDPFSQFRDFINLMENRVHALAESYGVENLAGPQGFAVLYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGF
IQVVSSKEDKRYKQVVLTELGKSKAQNIQDFHDEIHRQILAGVDHEDLKISFRVFNRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=20357 SMA_1223 CCF02514.1 1189383..1189823(-) (rcrR) [Streptococcus macedonicus ACA-DC 198]
ATGCACAAGAAAGATCCGTTTTCACAGTTTAGGGATTTTATCAATTTAATGGAAAATCGTGTCCATGCCCTTGCGGAAAG
TTATGGTGTTGAAAATCTGGCTGGCCCACAGGGATTTGCGGTATTGTATCTTCGTGATAATCCCGATAAAGAAATTTATA
TCAAGGACATTGAGAAGAGACTAAGAATTTCAAAGTCAGTGACTAGTAATTTGATTAAGCGCATGGAGAAAAATGGTTTT
ATCCAAGTTGTTTCGTCGAAAGAAGATAAGCGTTATAAGCAAGTGGTGTTGACTGAACTTGGAAAATCAAAGGCTCAGAA
TATTCAAGATTTCCATGATGAAATTCATAGGCAAATCTTAGCTGGTGTTGACCATGAGGATCTCAAAATCTCGTTTCGCG
TCTTTAACCGCATTTTGAAAAATTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

55.245

97.945

0.541

Multiple sequence alignment