Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SMA_1221 Genome accession   HE613569
Coordinates   1185803..1187575 (-) Length   590 a.a.
NCBI ID   CCF02512.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180803..1192575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1215 - 1181173..1181799 (-) 627 CCF02506.1 L-proline glycine betaine binding ABC transporter protein ProX/Osmotic adaptation -
  SMA_1216 - 1181792..1182565 (-) 774 CCF02507.1 L-proline glycine betaine ABC transport system permease protein ProV -
  SMA_1217 - 1182578..1183498 (-) 921 CCF02508.1 L-proline glycine betaine binding ABC transporter protein ProX/Osmotic adaptation -
  SMA_1218 - 1183488..1184123 (-) 636 CCF02509.1 L-proline glycine betaine binding ABC transporter protein ProX/Osmotic adaptation -
  SMA_1219 - 1184113..1184565 (-) 453 CCF02510.1 Hypothetical protein -
  SMA_1220 - 1184555..1185489 (-) 935 Protein_1219 putative oxidoreductase -
  SMA_1221 rcrQ 1185803..1187575 (-) 1773 CCF02512.1 Multidrug ABC exporter (DrugE2) family, ATP binding/membrane-spanning protein Regulator
  SMA_1222 rcrP 1187565..1189379 (-) 1815 CCF02513.1 Lipid A export ATP-binding/permease protein MsbA Regulator
  SMA_1223 rcrR 1189383..1189823 (-) 441 CCF02514.1 Transcriptional regulator, MarR family Regulator
  SMA_1224 def 1189999..1190409 (-) 411 CCF02515.1 Peptide deformylase -
  SMA_1225 rimI 1190484..1190915 (-) 432 CCF02516.1 Acetyltransferase, GNAT family -
  SMA_1226 gdh 1191193..1192545 (-) 1353 CCF02517.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65316.51 Da        Isoelectric Point: 5.3523

>NTDB_id=20355 SMA_1221 CCF02512.1 1185803..1187575(-) (rcrQ) [Streptococcus macedonicus ACA-DC 198]
MENKKKTSFYGRMKPYIRGLQLPFLLAVIGAIVSATITVIGPDKLKEITNIITKGLTPTATGMIPGIDLDKVGKIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKINKVPLSYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAVGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAIKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVTFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMR
FYEIDKGQITIDSVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEAA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=20355 SMA_1221 CCF02512.1 1185803..1187575(-) (rcrQ) [Streptococcus macedonicus ACA-DC 198]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTATATTAGAGGTCTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGATTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATATAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTAAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACTGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTAACAAGGTTCCATTGAGTTACTTTGATAGTCATTCACAAGGAGATACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTAGTGACATCAACCATGTTA
TTGATTGGTTCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTTTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGCCAACAAAATAACTTGGCTGCGATTAACGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGTTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGTTATGTTATGGTCTGTGTGGTTGGTGCTATTAAAGTTATCAATGGTGATATTACCATGGGTGATGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGTCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGACGAGTCTGACAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTACCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TAGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGTGCTGGTAAAACAACCATTGTTAACCTGCTCATGAGA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATAGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGATGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACGCTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGATGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGTGGCTTCTATGCTGACCTTTACAATTCACAATT
TGAAGCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.595

99.492

0.732

Multiple sequence alignment