Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SMA_1222 Genome accession   HE613569
Coordinates   1187565..1189379 (-) Length   604 a.a.
NCBI ID   CCF02513.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182565..1194379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1217 - 1182578..1183498 (-) 921 CCF02508.1 L-proline glycine betaine binding ABC transporter protein ProX/Osmotic adaptation -
  SMA_1218 - 1183488..1184123 (-) 636 CCF02509.1 L-proline glycine betaine binding ABC transporter protein ProX/Osmotic adaptation -
  SMA_1219 - 1184113..1184565 (-) 453 CCF02510.1 Hypothetical protein -
  SMA_1220 - 1184555..1185489 (-) 935 Protein_1219 putative oxidoreductase -
  SMA_1221 rcrQ 1185803..1187575 (-) 1773 CCF02512.1 Multidrug ABC exporter (DrugE2) family, ATP binding/membrane-spanning protein Regulator
  SMA_1222 rcrP 1187565..1189379 (-) 1815 CCF02513.1 Lipid A export ATP-binding/permease protein MsbA Regulator
  SMA_1223 rcrR 1189383..1189823 (-) 441 CCF02514.1 Transcriptional regulator, MarR family Regulator
  SMA_1224 def 1189999..1190409 (-) 411 CCF02515.1 Peptide deformylase -
  SMA_1225 rimI 1190484..1190915 (-) 432 CCF02516.1 Acetyltransferase, GNAT family -
  SMA_1226 gdh 1191193..1192545 (-) 1353 CCF02517.1 NADP-specific glutamate dehydrogenase -
  SMA_1227 - 1192976..1193473 (+) 498 CCF02518.1 Membrane protein, putative -
  SMA_1228 queF 1193529..1194020 (-) 492 CCF02519.1 NADPH dependent preQ0 reductase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67196.27 Da        Isoelectric Point: 6.4176

>NTDB_id=20356 SMA_1222 CCF02513.1 1187565..1189379(-) (rcrP) [Streptococcus macedonicus ACA-DC 198]
MLKILKRLTAKEVIMLIFAVLFVCLNVYLELKIPDYMSNITTLLSTEGTKVKDIFAWNFDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLNFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGIQVITKGPIMAIWAITKIADKNH
EWLLVLIVAVAVMFLMIMFLLMMVMPKQRMIQRLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFAQVNDNVTNLNLFIG
RSMALLSPVMTGISSGMTLAIYWIGAHLIENIAIPTDPTKIASAMQDKVDLFSDMVVYSSYAMQVVIGLMMMIVVFFILP
RAVVAAGRINEVLETKSSIEYPETNQAKPTEKGSVEFDNVSFRYSKNSEAVLEHVSFKAKAGDTIAFIGSTGSGKSTLVN
LIPRFYDATEGTIKVDGIDVRQYDHDTLHKIVGYIPQKAVLFSGDIASNMDMGESNNSPLDDDKMWEALDLAQAKTFVEM
KDGKLKAPVAQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGRVVGQGTHEELLANNDVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=20356 SMA_1222 CCF02513.1 1187565..1189379(-) (rcrP) [Streptococcus macedonicus ACA-DC 198]
ATGTTAAAAATTTTGAAACGCTTAACAGCAAAAGAAGTTATAATGCTTATTTTTGCTGTATTATTTGTGTGTTTGAATGT
TTATCTTGAGTTGAAAATTCCAGATTATATGTCGAATATCACGACCTTGCTATCAACAGAAGGAACAAAAGTAAAAGATA
TTTTTGCTTGGAACTTTGATGCACCAGGTATGCGTATGGTCTTGCTTTCTTTGGGAAGCTTTGCAGCATCTGTTGTTGTC
GGTTTCCTAGCTGCTCGTATTGCGGCAAGTTTTAGTACACGCCTACGTGATGATATTTTCCATAGTGTCTTGAATTTTTC
AGATGCTGAAATCAAGAAATTTTCAATTCCTAGTCTTTTGACACGTACGACCAATGATATTACACAAATTCAATTGGTTT
TCACAATGGGAATCCAAGTCATTACTAAAGGACCTATCATGGCAATTTGGGCAATAACCAAGATTGCTGATAAAAATCAT
GAATGGTTATTGGTTCTTATCGTCGCAGTTGCAGTTATGTTCTTGATGATTATGTTCTTGTTGATGATGGTGATGCCTAA
GCAACGTATGATTCAAAGATTAACCGATAAATTGAACAGTGTTACGCGTGAATCATTGACAGGTATCCGTGTGGTGCGTG
CATACAATGCCGAAGATTATCAAGATGCCAAATTTGCACAAGTCAATGATAATGTTACCAATCTTAACCTCTTTATTGGA
CGTTCAATGGCGTTGTTATCTCCAGTAATGACAGGAATTTCAAGCGGAATGACACTTGCTATTTATTGGATTGGAGCGCA
TTTGATTGAAAATATTGCCATTCCGACAGACCCAACGAAAATTGCTAGCGCTATGCAAGATAAAGTTGATTTGTTTTCAG
ATATGGTTGTTTATTCATCATATGCCATGCAAGTTGTTATAGGATTAATGATGATGATTGTCGTATTCTTCATTTTACCT
CGTGCCGTTGTTGCTGCTGGGCGTATTAATGAAGTTCTTGAAACAAAATCTTCAATTGAATATCCAGAAACAAATCAAGC
TAAACCAACTGAAAAAGGTTCTGTTGAATTTGACAATGTTTCATTCCGTTACAGCAAAAATTCTGAAGCTGTTTTGGAAC
ACGTTTCCTTTAAAGCGAAAGCTGGAGACACGATTGCCTTTATCGGTTCAACTGGTTCTGGTAAATCAACGTTGGTGAAC
TTGATTCCACGTTTTTATGATGCGACAGAAGGAACGATTAAAGTCGATGGCATTGATGTTCGTCAATATGACCACGATAC
GCTTCATAAGATTGTTGGTTATATTCCGCAAAAAGCAGTGCTTTTTAGTGGGGATATCGCTTCAAATATGGATATGGGAG
AAAGCAACAACTCGCCACTTGATGATGACAAGATGTGGGAAGCTCTTGATTTAGCTCAAGCTAAGACATTCGTTGAAATG
AAAGACGGTAAGTTAAAAGCACCTGTTGCTCAAGGTGGTCAAAACTTCTCAGGTGGTCAAAAACAACGTTTGGCAATTGC
GCGTGCTCTTGCTCGTAAGCCTGAAATTATCATCTTTGATGATTCGTTCTCAGCACTTGACTACAAGACTGACCGAATCC
TTCGTTCACAGTTGAAAGAACGTACAGCTGATATGACAAAACTAATCGTGGCACAACGTATCTCAACGATTATGGACGCT
GACCAAATTTTGGTCTTGGATGAAGGTAGAGTTGTTGGTCAAGGTACGCACGAAGAATTGCTCGCAAACAACGATGTTTA
TCGTGAAATTGCTTACTCACAACTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.612

100

0.667

Multiple sequence alignment