Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SPG_1010 Genome accession   CP001015
Coordinates   971498..972178 (+) Length   226 a.a.
NCBI ID   ACF55614.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 966498..977178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1005 - 966927..967787 (+) 861 ACF55225.1 methionine aminopeptidase, type I -
  SPG_1006 - 968012..968566 (+) 555 ACF56373.1 Degenerate transposase -
  SPG_1007 - 968583..968972 (+) 390 ACF56136.1 Degenerate transposase -
  SPG_1008 pcrA 969164..971455 (+) 2292 ACF55659.1 ATP-dependent DNA helicase PcrA -
  SPG_1010 radC 971498..972178 (+) 681 ACF55614.1 DNA repair protein RadC Machinery gene
  SPG_1009 - 972175..972864 (-) 690 ACF55484.1 glutamine amidotransferase -
  SPG_1011 - 972882..973523 (-) 642 ACF56624.1 hypothetical protein -
  SPG_1012 - 973606..973821 (-) 216 ACF54831.1 conserved hypothetical protein -
  SPG_1013 - 973829..974176 (-) 348 ACF54842.1 conserved hypothetical protein -
  SPG_1014 - 974181..975296 (-) 1116 ACF55354.1 aminotransferase, class V -
  SPG_1015 prs2 975306..976265 (-) 960 ACF56339.1 ribose-phosphate pyrophosphokinase 2 -
  SPG_1016 - 976378..976947 (-) 570 ACF56818.1 adenylate cyclase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25535.53 Da        Isoelectric Point: 7.1203

>NTDB_id=20356 SPG_1010 ACF55614.1 971498..972178(+) (radC) [Streptococcus pneumoniae G54]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=20356 SPG_1010 ACF55614.1 971498..972178(+) (radC) [Streptococcus pneumoniae G54]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

100

100

1
  radC Streptococcus pneumoniae R6

99.558

100

0.996
  radC Streptococcus pneumoniae D39

99.558

100

0.996
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment