Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BLD42_RS07790 Genome accession   NZ_CP017860
Coordinates   1493429..1493740 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain TS1218     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488429..1498740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD42_RS07770 (BLD42_07770) ctsE 1489298..1490857 (-) 1560 WP_032601517.1 GspE/PulE family protein Machinery gene
  BLD42_RS07775 (BLD42_07775) ctsX 1490847..1491434 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BLD42_RS07780 (BLD42_07780) ctsP 1491438..1492046 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD42_RS07785 (BLD42_07785) ctsD 1492039..1493451 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD42_RS07790 (BLD42_07790) ctsR 1493429..1493740 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  BLD42_RS07795 (BLD42_07795) nifJ 1493764..1497324 (-) 3561 WP_052796067.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BLD42_RS07800 (BLD42_07800) - 1497417..1498058 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=203301 BLD42_RS07790 WP_002855438.1 1493429..1493740(-) (ctsR) [Campylobacter jejuni strain TS1218]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=203301 BLD42_RS07790 WP_002855438.1 1493429..1493740(-) (ctsR) [Campylobacter jejuni strain TS1218]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment