Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DN94_03310 Genome accession   CP007565
Coordinates   611152..612156 (+) Length   334 a.a.
NCBI ID   AHX74745.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 606152..617156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03290 - 606375..607214 (+) 840 AHX74742.1 D-mannonate oxidoreductase -
  DN94_03295 - 607367..608179 (+) 813 AHX74743.1 haloacid dehalogenase -
  DN94_03305 - 609857..610942 (-) 1086 AHX74744.1 dipeptidase -
  DN94_03310 ccpA 611152..612156 (+) 1005 AHX74745.1 catabolite control protein A Regulator
  DN94_03320 - 613797..614795 (+) 999 AHX74746.1 glycosyl transferase family 1 -
  DN94_03325 - 614797..616131 (+) 1335 AHX74747.1 1,2-diacylglycerol 3-glucosyltransferase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36617.69 Da        Isoelectric Point: 5.7185

>NTDB_id=20295 DN94_03310 AHX74745.1 611152..612156(+) (ccpA) [Streptococcus agalactiae strain 138spar]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILARGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAAVDVIDILAGNHKDIAFVSGPLIDDINGKVRLAGYKEGLKKNGLNFKEGLVFEANYRYAEGFALAQRVINAG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPIAQYTRPNLTSISQPVYDLGAVSMRMLTKIMHKEELEEKEI
VLNHGIVKRGTTNN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=20295 DN94_03310 AHX74745.1 611152..612156(+) (ccpA) [Streptococcus agalactiae strain 138spar]
ATGAATACAGATGATACGATTACGATTTATGATGTTGCCCGTGAAGCAGGTGTTTCGATGGCAACTGTTAGTCGTGTGGT
AAATGGAAATAAAAATGTCAAGGAAAATACACGTAAGAAAGTCCTTGAAGTTATTGATCGTCTTGACTATCGTCCAAATG
CTGTGGCGCGTGGTTTAGCAAGTAAAAAAACGACAACTGTTGGTGTTGTCATTCCTAATATCGCAAATAGCTACTTTTCA
ATTTTAGCGCGTGGTATTGATGATATTGCAGCAATGTACAAATATAACATTGTCCTTGCTTCAAGTGATGAAGACGATGA
TAAAGAGGTTAATGTTGTTAATACTTTGTTCGCTAAGCAAGTAGACGGTATTATTTTTATGGGACACCACTTAACTGAAA
AGATTCGTGCAGAGTTCTCTCGTTCACGCACACCGATTGTTTTAGCAGGTACTGTGGACCTTGAGCATCAATTACCAAGT
GTTAATATCGATTACAAAGCAGCAGCAGTTGATGTTATTGATATTTTAGCTGGCAATCATAAAGACATTGCTTTTGTATC
AGGACCACTTATTGACGATATTAATGGCAAGGTTCGTTTGGCAGGATACAAAGAAGGTCTCAAGAAAAATGGCTTAAACT
TTAAAGAGGGGTTGGTTTTTGAAGCCAACTACCGTTATGCTGAAGGCTTTGCATTAGCTCAACGTGTGATTAATGCTGGA
GCAACAGCAGCATATGTTGCTGAGGATGAGTTAGCGGCAGGTTTGTTAAATGGTCTTTTTGAGGCAGGTAAACGTGTCCC
TGAAGATTTTGAAATTATCACAAGCAATGACTCGCCAATCGCACAATATACACGTCCTAACTTAACTTCTATCAGTCAAC
CGGTCTATGATTTGGGTGCTGTTAGCATGCGTATGCTAACAAAAATTATGCATAAAGAAGAGTTGGAAGAAAAAGAAATA
GTGCTTAATCACGGGATTGTTAAACGTGGCACAACAAATAATTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.916

99.401

0.784
  ccpA Streptococcus pneumoniae D39

77.108

99.401

0.766
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.402

99.102

0.569

Multiple sequence alignment