Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BK055_RS18175 Genome accession   NZ_CP017775
Coordinates   3658842..3660227 (-) Length   461 a.a.
NCBI ID   WP_071182021.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653842..3665227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS18140 (BK055_18140) flgL 3654017..3654934 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BK055_RS18145 (BK055_18145) flgK 3654946..3656463 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BK055_RS18150 (BK055_18150) - 3656479..3656961 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BK055_RS18155 (BK055_18155) flgM 3656976..3657242 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BK055_RS18160 (BK055_18160) - 3657312..3657731 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  BK055_RS18165 (BK055_18165) comFC 3657805..3658494 (-) 690 WP_222103466.1 phosphoribosyltransferase family protein Machinery gene
  BK055_RS18170 (BK055_18170) - 3658500..3658784 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BK055_RS18175 (BK055_18175) comFA 3658842..3660227 (-) 1386 WP_071182021.1 DEAD/DEAH box helicase Machinery gene
  BK055_RS18180 (BK055_18180) - 3660335..3661183 (-) 849 WP_003151387.1 DegV family protein -
  BK055_RS18185 (BK055_18185) degU 3661281..3661970 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BK055_RS18190 (BK055_18190) degS 3662047..3663210 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  BK055_RS18195 (BK055_18195) - 3663433..3664080 (+) 648 WP_063636496.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52747.24 Da        Isoelectric Point: 10.2706

>NTDB_id=202840 BK055_RS18175 WP_071182021.1 3658842..3660227(-) (comFA) [Bacillus velezensis strain 9912D]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQIPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDDRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=202840 BK055_RS18175 WP_071182021.1 3658842..3660227(-) (comFA) [Bacillus velezensis strain 9912D]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAATCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
ACCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGCTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment